ArticleFunctional & integrative genomics2009
Genomics in cereals: from genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection.
Article in Functional & integrative genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.
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Who cites it
42 citing papers in PubMed, 1 synthesis or guideline pooled it, 94 citations in OpenAlex.
- Consensus genomic regions associated with multiple abiotic stress tolerance in wheat and implications for wheat breeding.Scientific reports · 2022Pooled it
- Draft Sequencing Crested Wheatgrass Chromosomes Identified Evolutionary Structural Changes and Genes and Facilitated the Development of SSR Markers.International journal of molecular sciences · 2022Article
- Meta-QTLs, ortho-MQTLs, and candidate genes for thermotolerance in wheat (Molecular breeding : new strategies in plant improvement · 2021Article
- Analysis of Chromosome Associations during Early Meiosis in Wheat Lines Carrying Chromosome Introgressions fromPlants (Basel, Switzerland) · 2021Article
- Meta-QTLs, ortho-MQTLs and candidate genes for nitrogen use efficiency and root system architecture in bread wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Tritordeum: Creating a New Crop Species-The Successful Use of Plant Genetic Resources.Plants (Basel, Switzerland) · 2021Review
- The Triple Jags of Dietary Fibers in Cereals: How Biotechnology IsFrontiers in plant science · 2021Review
- Identification of a major QTL and associated molecular marker for high arabinoxylan fibre in white wheat flour.PloS one · 2020Article
- Uncovering homeologous relationships between tetraploid Agropyron cristatum and bread wheat genomes using COS markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Article
- Agronomic Traits and Molecular Marker Identification of Wheat-Frontiers in plant science · 2017Article
- Molecular cytogenetic (FISH) and genome analysis of diploid wheatgrasses and their phylogenetic relationship.PloS one · 2017Article
- Article
- Flow sorting of C-genome chromosomes from wild relatives of wheat Aegilops markgrafii, Ae. triuncialis and Ae. cylindrica, and their molecular organization.Annals of botany · 2015Article
- Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.BMC genomics · 2015Article
- Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops.Genome biology and evolution · 2015Article
- FRIZZY PANICLE drives supernumerary spikelets in bread wheat.Plant physiology · 2015Article
- Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Genetic and molecular bases of yield-associated traits: a translational biology approach between rice and wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Review
Corrections and comments
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Authors and funding
12 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent updates in comparative genomics among cereals have provided the opportunity to identify conserved orthologous set (COS) DNA sequences for cross-genome map-based cloning of candidate genes underpinning quantitative traits. New tools are described that are applicable to any cereal genome of interest, namely, alignment criterion for orthologous couples identification, as well as the Intron Spanning Marker software to automatically select intron-spanning primer pairs. In order to test the software, it was applied to the bread wheat genome, and 695 COS markers were assigned to 1,535 wheat loci (on average one marker/2.6 cM) based on 827 robust rice-wheat orthologs. Furthermore, 31 of the 695 COS markers were selected to fine map a pentosan viscosity quantitative trait loci (QTL) on wheat chromosome 7A. Among the 31 COS markers, 14 (45%) were polymorphic between the parental lines and 12 were mapped within the QTL confidence interval with one marker every 0.6 cM defining candidate genes among the rice orthologous region.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.