Evidence map›Paper›PMID 19575012›Full record

ArticleEMBO reports2009

Epigenetic reprogramming during wound healing: loss of polycomb-mediated silencing may enable upregulation of repair genes.

Tanya Shaw, Paul Martin

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
13.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 167 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Cellular and molecular mechanisms of skin wound healing.Nature reviews. Molecular cell biology · 2024
    Review
  7. Article
  8. Review
  9. Article
  10. Parallel repair mechanisms in plants and animals.Disease models & mechanisms · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Epigenetic basis of diabetic vasculopathy.Frontiers in endocrinology · 2022
    Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Review

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Tanya ShawDepartment of Biochemistry, School of Medical Sciences, University of Bristol, Bristol, UK. tshaw@sgul.ac.uk
Paul Martin
University of Bristol · GB

Funding

Cancer Research UK
6 · The paper itself

Abstract

Tissue repair is a complex process that requires wound-edge cells to proliferate and migrate, which in turn necessitates induction of a large repair transcriptome. Epigenetic modifications have emerged as crucial regulators of gene expression. Here, we ask whether epigenetic reprogramming might contribute to the concerted induction of repair genes by wound-edge cells. Polycomb group proteins (PcGs) co-operatively silence genes by laying down repressive marks such as histone H3 lysine 27 trimethylation (H3K27me3), which can be removed by specific demethylases. We show that PcGs Eed, Ezh2 and Suz12 are significantly downregulated during murine skin repair, whereas the newly described demethylases Jmjd3 and Utx are markedly upregulated. Correspondingly, we find a striking reduction of repressive H3K27me3 in the wound epidermis. Quantitative chromatin immunoprecipitation studies have revealed that there is less Eed bound to the regulatory regions of two paradigm wound-induced genes, Myc and Egfr, suggesting that loss of polycomb-mediated silencing might contribute to the induction of repair genes.

Indexed as

AnimalsBlotting, WesternCell LineChromatin ImmunoprecipitationEnhancer of Zeste Homolog 2 ProteinEpigenesis, GeneticHistone DemethylasesHistone-Lysine N-MethyltransferaseIn Vitro TechniquesJumonji Domain-Containing Histone DemethylasesMaleMethylationMiceNuclear ProteinsOxidoreductases, N-DemethylatingPolycomb-Group ProteinsEed protein, mouseEnhancer of Zeste Homolog 2 ProteinEzh2 protein, mouseHistone DemethylasesHistone-Lysine N-MethyltransferaseJumonji Domain-Containing Histone DemethylasesKdm6b protein, mouseNuclear ProteinsOxidoreductases, N-DemethylatingPolycomb-Group ProteinsPolycomb Repressive Complex 2Repressor ProteinsSuz12 protein, mouseUtx protein, mouse

Identifiers

PMID19575012
PMCPMC2726669
OpenAlexW2135498007

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.