Evidence map›Paper›PMID 19574456›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Development of GFP-based biosensors possessing the binding properties of antibodies.

Tej V Pavoor, Yong Ku Cho, Eric V Shusta

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
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  13. Article
  14. Stoichiometry and compositional plasticity of the yeast nuclear pore complex revealed by quantitative fluorescence microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Integrin-Targeting Fluorescent Proteins: Exploration of RGD Insertion Sites.Chembiochem : a European journal of chemical biology · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. The structure of a GFP-based antibody (fluorobody) to TLH, a toxin from Vibrio parahaemolyticus.Acta crystallographica. Section F, Structural biology communications · 2015
    Article
  20. Applications of Yeast Surface Display for Protein Engineering.Methods in molecular biology (Clifton, N.J.) · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Tej V PavoorDepartment of Chemical and Biological Engineering, University of Wisconsin, Madison, WI 53706, USA.
Yong Ku Cho
Eric V Shusta

Funding

Institutional Training in the Genomic SciencesT32HG002760 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI Qiongshi Lu · 2003 to 2026
$17.7M
Membrane Proteomics of the Blood-Brain BarrierR01NS052649 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI SHUSTA, ERIC V · 2006 to 2009
$1.3M
NHGRI NIH HHS 5T32HG002760NHGRI NIH HHS T32 HG002760NINDS NIH HHS NS052649NINDS NIH HHS R01 NS052649
6 · The paper itself

Abstract

Proteins that can bind specifically to targets that also have an intrinsic property allowing for easy detection could facilitate a multitude of applications. While the widely used green fluorescent protein (GFP) allows for easy detection, attempts to insert multiple binding loops into GFP to impart affinity for a specific target have been met with limited success because of the structural sensitivity of the GFP chromophore. In this study, directed evolution using a surrogate loop approach and yeast surface display yielded a family of GFP scaffolds capable of accommodating 2 proximal, randomized binding loops. The library of potential GFP-based binders or ''GFAbs'' was subsequently mined for GFAbs capable of binding to protein targets. Identified GFAbs bound with nanomolar affinity and required binding contributions from both loops indicating the advantage of a dual loop GFAb platform. Finally, GFAbs were solubly produced and used as fluorescence detection reagents to demonstrate their utility.

Indexed as

AntibodiesBiosensing TechniquesClone CellsDirected Molecular EvolutionFluorescenceGreen Fluorescent ProteinsMutagenesis, InsertionalMutant ProteinsMutationProtein BindingProtein Structure, SecondarySaccharomyces cerevisiaeSolubilityAntibodiesGreen Fluorescent ProteinsMutant Proteins

Identifiers

PMID19574456
PMCPMC2715507

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.