Evidence map›Paper›PMID 19571027›Full record

ArticleJournal of clinical microbiology2009

Population-based molecular epidemiology of leprosy in Cebu, Philippines.

Rama Murthy Sakamuri, Miyako Kimura, Wei Li, Hyun-Chul Kim, Hyeyoung Lee, Madanahally D Kiran, William C Black, Marivic Balagon, Robert Gelber, Sang-Nae Cho and 2 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00315809 (Molecular Epidemiology of Leprosy - Philippines), which is not on this map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00315809 completednot on this map

Molecular Epidemiology of Leprosy - Philippines

TypeobservationalSponsorColorado State UniversityRan2006 to 2010Enrolled310ConditionsLeprosy
3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Molecular epidemiological characteristics ofFrontiers in public health · 2024
    Article
  3. Genotyping ofIranian journal of microbiology · 2023
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Mycobacterium leprae in Colombia described by SNP7614 in gyrA, two minisatellites and geography.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2013
    Article
  11. Molecular, ethno-spatial epidemiology of leprosy in China: novel insights for tracing leprosy in endemic and non endemic provinces.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2013
    Article
  12. Identification of urban leprosy clusters.TheScientificWorldJournal · 2013
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Transmission of leprosy in Qiubei County, Yunnan, China: insights from an 8-year molecular epidemiology investigation.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Rama Murthy SakamuriDepartment of Microbiology, Immunology, and Pathology, Colorado State University, 1682 Campus Delivery, Fort Collins, CO 80523, USA.
Miyako Kimura
Wei Li
Hyun-Chul Kim
Hyeyoung Lee
Madanahally D Kiran
William C Black
Marivic Balagon
Robert Gelber
Sang-Nae Cho
Patrick J Brennan
Varalakshmi Vissa
Colorado State University · USYonsei University · KRUniversity of Cebu · PH

Funding

Molecular Epidemiology of LeprosyR01AI063457 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI VISSA, VARALAKSHMI D · 2005 to 2010
$1.9M
Molecular typing of Mycobacterium lepraeR03AI059644 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI VISSA, VARALAKSHMI D · 2004 to 2005
$145k
Leprosy Research Support-Post Genome -26625469N01AI025469 · NIAID · Colorado State University · 2004 to 2004
–
NIAID NIH HHS AI-063457NIAID NIH HHS AI-59644NIAID NIH HHS N01 AI025469NIAID NIH HHS N01-AI-25469NIAID NIH HHS R01 AI063457NIAID NIH HHS R03 AI059644
6 · The paper itself

Abstract

To address the persisting problem of leprosy in Cebu, Philippines, we compiled a database of more than 200 patients who attend an established referral skin clinic. We described the patient characteristics in conventional demographic parameters and also applied multiple-locus variable-number tandem-repeat (VNTR) analysis (MLVA) and single nucleotide polymorphism (SNP) typing for Mycobacterium leprae in biopsied skin lesion samples. These combined approaches revealed that transmission is ongoing, with the affected including the young Cebuano population under 40 years of age in both crowded cities and rural areas of the island. The emergence of multicase families (MCF) is indicative of infection unconstrained by standard care measures. For the SNPs, we designed a low-cost PCR-restriction fragment length polymorphism typing method. MLVA in M. leprae was highly discriminatory in this population yet could retain broad groups, as defined by the more stable SNPs, implying temporal marker stability suitable for interpreting population structures and evolution. The majority of isolates belong to an Asian lineage (SNP type 1), and the rest belong to a putative postcolonial lineage (SNP type 3). Specific alleles at two VNTR loci, (GGT)5 and 21-3, were highly associated with SNP type 3 in this population. MLVA identified M. leprae genotype associations for patients with known epidemiological links such as in MCFs and in some villages. These methods provide a molecular database and a rational framework for targeted approaches to search and confirm leprosy transmission in various scenarios.

Indexed as

AdolescentAdultAgedBiopsyChildChild, PreschoolDNA, BacterialDNA FingerprintingFemaleGenotypeHumansLeprosyMaleMiddle AgedMinisatellite RepeatsMolecular EpidemiologyDNA, Bacterial

Identifiers

PMID19571027
PMCPMC2738081
OpenAlexW2156779865

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.