Evidence map›Paper›PMID 19568743›Full record

ArticleImmunogenetics2009

Characterization of equine and other vertebrate TLR3, TLR7, and TLR8 genes.

Natalia M Astakhova, Andrey A Perelygin, Andrey A Zharkikh, Teri L Lear, Stephen J Coleman, James N MacLeod, Margo A Brinton

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Immunogenetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 46 citations in OpenAlex.

  1. A self-amplifying mRNA SARS-CoV-2 vaccine candidate induces safe and robust protective immunity in preclinical models.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Trial
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  3. Review
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  6. Toll-like Receptor 3 in the Hybrid Yellow Catfish (Animals : an open access journal from MDPI · 2023
    Article
  7. Article
  8. Immunity againstVaccines · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Natalia M AstakhovaDepartment of Biology, Georgia State University, Atlanta, GA 30302, USA.
Andrey A Perelygin
Andrey A Zharkikh
Teri L Lear
Stephen J Coleman
James N MacLeod
Margo A Brinton
Georgia State University · USUniversity of Kentucky · USMyriad (Germany) · DE

Funding

Analysis of SNPs Associated With WNV-Induced DiseaseR01CI000216 · CI · GEORGIA STATE UNIVERSITY · PI BRINTON, MARGO A · 2004 to 2006
$198k
NCPDCID CDC HHS CI000216NCPDCID CDC HHS R01 CI000216
6 · The paper itself

Abstract

Toll-like receptors 3, 7, and 8 (TLR3, TLR7, and TLR8) were studied in the genomes of the domestic horse and several other mammals. The messenger RNA sequences and exon/intron structures of these TLR genes were determined. An equine bacterial artificial chromosome clone containing the TLR3 gene was assigned by fluorescent in situ hybridization to the horse chromosomal location ECA27q16-q17 and this map location was confirmed using an equine radiation hybrid panel. Direct sequencing revealed 13 single-nucleotide polymorphisms in the coding regions of the equine TLR 3, 7, and 8 genes. Of these polymorphisms, 12 were not previously reported. The allelic frequency was estimated for each single-nucleotide polymorphism from genotyping data obtained for 154 animals from five horse breeds. Some of these frequencies varied significantly among different horse breeds. Domain architecture predictions for the three equine TLR protein sequences revealed several conserved regions within the variable leucine-rich repeats between the corresponding horse and cattle TLR proteins. A phylogenetic analysis did not indicate that any significant exchanges had occurred between paralogous TLR7 and TLR8 genes in 20 vertebrate species analyzed.

Indexed as

AllelesAnimalsBase SequenceCatsCattleConserved SequenceDNA, ComplementaryDogsEvolution, MolecularExonsGene FrequencyHorsesImmunogenetic PhenomenaIntronsMolecular Sequence DataPhylogenyDNA, ComplementaryRNA, MessengerToll-Like Receptor 3Toll-Like Receptor 7Toll-Like Receptor 8

Identifiers

PMID19568743
OpenAlexW1977999392

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.