Evidence map›Paper›PMID 19564609›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Major flowering time gene, flowering locus C, regulates seed germination in Arabidopsis thaliana.

George C K Chiang, Deepak Barua, Elena M Kramer, Richard M Amasino, Kathleen Donohue

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed
28.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 287 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
    Review
  11. Article
  12. Orphan geneHorticulture research · 2024
    Article
  13. An Overview on MADS Box Members in Plants: A Meta-Review.International journal of molecular sciences · 2024
    Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Alternative splicing of theForestry research · 2024
    Article
  19. Article
  20. Evolutionary Dynamics ofPlants (Basel, Switzerland) · 2023
    Article

70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

George C K ChiangDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.
Deepak Barua
Elena M Kramer
Richard M Amasino
Kathleen Donohue
Harvard University · USDuke University · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flowering locus C (FLC) is a major regulator of flowering responses to seasonal environmental factors. Here, we document that FLC also regulates another major life-history transition-seed germination, and that natural variation at the FLC locus and in FLC expression is associated with natural variation in temperature-dependent germination. FLC-mediated germination acts through additional genes in the flowering pathway (FT, SOC1, and AP1) before involving the abscisic acid catabolic pathway (via CYP707A2) and gibberellins biosynthetic pathway (via GA20ox1) in seeds. Also, FLC regulation of germination is largely maternally controlled, with FLC peaking and FT, SOC1, and AP1 levels declining at late stages of seed maturation. High FLC expression during seed maturation is associated with altered expression of hormonal genes (CYP707A2 and GA20ox1) in germinating seeds, indicating that gene expression before the physiological independence of seeds can influence gene expression well after any physical connection between maternal plants and seeds exists. The major role of FLC in temperature-dependent germination documented here reveals a much broader adaptive significance of natural variation in FLC. Therefore, pleiotropy between these major life stages likely influences patterns of natural selection on this important gene, making FLC a promising case for examining how pleiotropy influences adaptive evolution.

Indexed as

Genetic VariationAdaptation, BiologicalArabidopsisArabidopsis ProteinsFlowersGene Expression Regulation, PlantGerminationMADS Domain ProteinsSeedsTemperatureArabidopsis ProteinsAt5g10140 protein, ArabidopsisMADS Domain Proteins

Identifiers

PMID19564609
PMCPMC2710639
OpenAlexW2159090253

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.