Evidence map›Paper›PMID 19555460›Full record

ArticleMolecular microbiology2009

The ObgE/CgtA GTPase influences the stringent response to amino acid starvation in Escherichia coli.

Nicole S Persky, Daniel J Ferullo, Deani L Cooper, Hayley R Moore, Susan T Lovett

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. Article
  8. Metabolism and physiology of pathogenic bacterial obligate intracellular parasites.Frontiers in cellular and infection microbiology · 2024
    Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  14. The Mla pathway ineLife · 2020
    Article
  15. The alarmones (p)ppGpp directly regulate translation initiation during entry into quiescence.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Nicole S PerskyDepartment of Biology and Rosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, MA, USA.
Daniel J Ferullo
Deani L Cooper
Hayley R Moore
Susan T Lovett
Brandeis University · US

Funding

Replication Fork RepairR01GM051753 · NIGMS · BRANDEIS UNIVERSITY · PI LOVETT, SUSAN THOMAS · 1994 to 2025
$10.7M
Macromolecular Structure MechanismT32GM007596 · NIGMS · BRANDEIS UNIVERSITY · PI OPRIAN, DANIEL D · 1985 to 2019
$4.5M
Bacterial cell cycle controlR01GM079510 · NIGMS · BRANDEIS UNIVERSITY · PI LOVETT, SUSAN THOMAS · 2007 to 2010
$1.4M
NIGMS NIH HHS R01 GM051753NIGMS NIH HHS R01 GM079510NIGMS NIH HHS T32 GM007596PHS HHS R01 G51753PHS HHS R01 G79510PHS HHS T32 G07596
6 · The paper itself

Abstract

The stringent response is important for bacterial survival under stressful conditions, such as amino acid starvation, and is characterized by the accumulation of ppGpp and pppGpp. ObgE (CgtA, YhbZ) is an essential conserved GTPase in Escherichia coli and several observations have implicated the protein in the control of the stringent response. However, consequences of the protein on specific responses to amino acid starvation have not been noted. We show that ObgE binds to ppGpp with biologically relevant affinity in vitro, implicating ppGpp as an in vivo ligand of ObgE. ObgE mutants increase the ratio of pppGpp to ppGpp within the cell during the stringent response. These changes are correlated with a delayed inhibition of DNA replication by the stringent response, delayed resumption of DNA replication after release, as well as a decreased survival after amino acid deprivation. With these data, we place ObgE as an active effector of the response to amino acid starvation in vivo. Our data correlate the pppGpp/ppGpp ratio with DNA replication control under bacterial starvation conditions, suggesting a possible role for the relative balance of these two nucleotides.

Indexed as

Amino AcidsDNA, BacterialDNA ReplicationEscherichia coliEscherichia coli ProteinsGuanosine TetraphosphateMonomeric GTP-Binding ProteinsSerineAmino AcidsDNA, BacterialEscherichia coli ProteinsGuanosine TetraphosphateMonomeric GTP-Binding ProteinsObgE protein, E coliSerineserine hydroxamate

Identifiers

PMID19555460
PMCPMC2771346
OpenAlexW2162380932

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.