Evidence map›Paper›PMID 19555380›Full record

ArticleEnvironmental microbiology2009

Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia.

Stephen P Cummings, Prasad Gyaneshwar, Pablo Vinuesa, Frank T Farruggia, Mitchell Andrews, David Humphry, Geoffrey N Elliott, Andrew Nelson, Caroline Orr, Deborah Pettitt and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 113 citations in OpenAlex.

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  9. A collection of novelFrontiers in plant science · 2023
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  17. Biochemical and Anatomical Investigation ofInternational journal of molecular sciences · 2019
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Stephen P CummingsSchool of Applied Sciences, Ellison Building, University of Northumbria, Newcastle-upon-Tyne, UK.
Prasad Gyaneshwar
Pablo Vinuesa
Frank T Farruggia
Mitchell Andrews
David Humphry
Geoffrey N Elliott
Andrew Nelson
Caroline Orr
Deborah Pettitt
Gopit R Shah
Scott R Santos
Hari B Krishnan
David Odee
Fatima M S Moreira
Janet I Sprent
J Peter W Young
Euan K James
University of Wisconsin–Milwaukee · USUniversity of York · GBArizona State University · USKenya Forestry Research Institute · KEUniversity of Dundee · GBUniversity of Sunderland · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Concatenated sequence analysis with 16S rRNA, rpoB and fusA genes identified a bacterial strain (IRBG74) isolated from root nodules of the aquatic legume Sesbania cannabina as a close relative of the plant pathogen Rhizobium radiobacter (syn. Agrobacterium tumefaciens). However, DNA:DNA hybridization with R. radiobacter, R. rubi, R. vitis and R. huautlense gave only 44%, 5%, 8% and 8% similarity respectively, suggesting that IRBG74 is potentially a new species. Additionally, it contained no vir genes and lacked tumour-forming ability, but harboured a sym-plasmid containing nifH and nodA genes similar to those in other Sesbania symbionts. Indeed, IRBG74 effectively nodulated S. cannabina and seven other Sesbania spp. that nodulate with Ensifer (Sinorhizobium)/Rhizobium strains with similar nodA genes to IRBG74, but not species that nodulate with Azorhizobium or Mesorhizobium. Light and electron microscopy revealed that IRBG74 infected Sesbania spp. via lateral root junctions under flooded conditions, but via root hairs under non-flooded conditions. Thus, IRBG74 is the first confirmed legume-nodulating symbiont from the Rhizobium (Agrobacterium) clade. Cross-inoculation studies with various Sesbania symbionts showed that S. cannabina could form fully effective symbioses with strains in the genera Rhizobium and Ensifer, only ineffective ones with Azorhizobium strains, and either partially effective (Mesorhizobium huakii) or ineffective (Mesorhizobium plurifarium) symbioses with Mesorhizobium. These data are discussed in terms of the molecular phylogeny of Sesbania and its symbionts.

Indexed as

AcyltransferasesBacterial ProteinsDNA, BacterialNitrogen FixationOxidoreductasesPeptide Elongation Factor GPhylogenyPlasmidsRhizobiumRNA, Ribosomal, 16SRoot Nodules, PlantSequence AlignmentSequence Analysis, DNASesbaniaSpecies SpecificitySymbiosisAcyltransferasesBacterial ProteinsDNA, Bacterialnitrogenase reductaseNodA protein, RhizobialesOxidoreductasesPeptide Elongation Factor GRNA, Ribosomal, 16S

Identifiers

PMID19555380
PMCPMC7163632
OpenAlexW2148593784

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.