Evidence map›Paper›PMID 19553670›Full record

ArticleThe Journal of biological chemistry2009

Structure-function analysis of inositol hexakisphosphate-induced autoprocessing in Clostridium difficile toxin A.

Rory N Pruitt, Benjamin Chagot, Michael Cover, Walter J Chazin, Ben Spiller, D Borden Lacy

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 112 citations in OpenAlex.

  1. Structural Mechanisms of DNAJC13 Dimeric Assembly and InsPbioRxiv : the preprint server for biology · 2026
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  6. Allosterically switchable network orientsProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Mechanisms ofFrontiers in cellular and infection microbiology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. ThemBio · 2022
    Article
  12. Structure and conformational dynamics ofLife science alliance · 2022
    Article
  13. Review
  14. Inactivation of Spores and Vegetative Forms ofInternational journal of environmental research and public health · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Large Clostridial Toxins: Mechanisms and Roles in Disease.Microbiology and molecular biology reviews : MMBR · 2021
    Review
  19. Review
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rory N PruittDepartments of Microbiology and Immunology, Nashville, Tennessee 37232.
Benjamin ChagotBiochemistry, Nashville, Tennessee 37232.
Michael CoverDepartments of Microbiology and Immunology, Nashville, Tennessee 37232.
Walter J ChazinBiochemistry, Nashville, Tennessee 37232.
Ben SpillerDepartments of Microbiology and Immunology, Nashville, Tennessee 37232; Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee 37232.
D Borden LacyDepartments of Microbiology and Immunology, Nashville, Tennessee 37232; Biochemistry, Nashville, Tennessee 37232.
Nashville Oncology Associates · US

Funding

Structural Biology of U-box E3 Ubiquitin LigasesR01GM075156 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 2005 to 2013
$2.4M
NIGMS NIH HHS R01 GM075156
6 · The paper itself

Abstract

The action of Clostridium difficile toxins A and B depends on inactivation of host small G-proteins by glucosylation. Cellular inositol hexakisphosphate (InsP6) induces an autocatalytic cleavage of the toxins, releasing an N-terminal glucosyltransferase domain into the host cell cytosol. We have defined the cysteine protease domain (CPD) responsible for autoprocessing within toxin A (TcdA) and report the 1.6 A x-ray crystal structure of the domain bound to InsP6. InsP6 is bound in a highly basic pocket that is separated from an unusual active site by a beta-flap structure. Functional studies confirm an intramolecular mechanism of cleavage and highlight specific residues required for InsP6-induced TcdA processing. Analysis of the structural and functional data in the context of sequences from similar and diverse origins highlights a C-terminal extension and a pi-cation interaction within the beta-flap that appear to be unique among the large clostridial cytotoxins.

Indexed as

Bacterial ToxinsCatalytic DomainCationsClostridioides difficileCrystallography, X-RayEnterotoxinsMagnetic Resonance SpectroscopyModels, BiologicalModels, MolecularMolecular ConformationPhytic AcidPoint MutationProtein Structure, SecondaryProtein Structure, TertiarySpectrophotometryTime FactorsBacterial ToxinsCationsEnterotoxinsPhytic AcidtcdA protein, Clostridium difficile

Identifiers

PMID19553670
PMCPMC2755918
OpenAlexW2083670614

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.