Evidence map›Paper›PMID 19553323›Full record

ArticleJournal of virology2009

Virus entry via the alternative coreceptors CCR3 and FPRL1 differs by human immunodeficiency virus type 1 subtype.

R Nedellec, M Coetzer, N Shimizu, H Hoshino, V R Polonis, L Morris, U E A Mårtensson, J Binley, J Overbaugh, D E Mosier

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 3 countries.

R NedellecDepartment of Immunology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
M Coetzer
N Shimizu
H Hoshino
V R Polonis
L Morris
U E A Mårtensson
J Binley
J Overbaugh
D E Mosier
Scripps Research Institute · USGunma University · JPFred Hutch Cancer Center · USLund University · SENational Institute for Communicable DiseasesTorrey Pines Institute For Molecular Studies · USWalter Reed Army Institute of Research · US

Funding

HIV CORECEPTOR SWITCHINGR01AI052778 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MOSIER, DONALD E · 2003 to 2010
$3.8M
SELECTING ENV TRIMERS IN HIV-VLP VACCINE PRESENTATIONSR01AI058763 · NIAID · TORREY PINES INST FOR MOLECULAR STUDIES · PI BINLEY, JAMES M · 2004 to 2007
$1.9M
Selecting Env Trimers in HIV-VLP Vaccine PresentationsR56AI058763 · NIAID · TORREY PINES INST FOR MOLECULAR STUDIES · PI BINLEY, JAMES M · 2008 to 2009
$591k
HIV Coreceptor SwitchingR56AI052778 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MOSIER, DONALD E · 2011 to 2011
$474k
Recombinant CCR5 Inhibitors for Topical MicrobicidesR21AI071935 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MOSIER, DONALD E · 2006 to 2007
$392k
NIAID NIH HHS AI052778NIAID NIH HHS AI058763NIAID NIH HHS AI071935NIAID NIH HHS R01 AI052778NIAID NIH HHS R01 AI058763NIAID NIH HHS R21 AI071935NIAID NIH HHS R56 AI052778NIAID NIH HHS R56 AI058763
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) infects target cells by binding to CD4 and a chemokine receptor, most commonly CCR5. CXCR4 is a frequent alternative coreceptor (CoR) in subtype B and D HIV-1 infection, but the importance of many other alternative CoRs remains elusive. We have analyzed HIV-1 envelope (Env) proteins from 66 individuals infected with the major subtypes of HIV-1 to determine if virus entry into highly permissive NP-2 cell lines expressing most known alternative CoRs differed by HIV-1 subtype. We also performed linear regression analysis to determine if virus entry via the major CoR CCR5 correlated with use of any alternative CoR and if this correlation differed by subtype. Virus pseudotyped with subtype B Env showed robust entry via CCR3 that was highly correlated with CCR5 entry efficiency. By contrast, viruses pseudotyped with subtype A and C Env proteins were able to use the recently described alternative CoR FPRL1 more efficiently than CCR3, and use of FPRL1 was correlated with CCR5 entry. Subtype D Env was unable to use either CCR3 or FPRL1 efficiently, a unique pattern of alternative CoR use. These results suggest that each subtype of circulating HIV-1 may be subject to somewhat different selective pressures for Env-mediated entry into target cells and suggest that CCR3 may be used as a surrogate CoR by subtype B while FPRL1 may be used as a surrogate CoR by subtypes A and C. These data may provide insight into development of resistance to CCR5-targeted entry inhibitors and alternative entry pathways for each HIV-1 subtype.

Indexed as

Virus InternalizationCell Lineenv Gene Products, Human Immunodeficiency VirusHIV-1HIV InfectionsHumansMolecular Sequence DataReceptors, CCR3Receptors, Formyl PeptideReceptors, LipoxinReceptors, VirusSequence Analysis, DNACCR3 protein, humanenv Gene Products, Human Immunodeficiency VirusFPR2 protein, humanReceptors, CCR3Receptors, Formyl PeptideReceptors, LipoxinReceptors, Virus

Identifiers

PMID19553323
PMCPMC2738165
OpenAlexW2157218331

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.