Evidence map›Paper›PMID 19553311›Full record

ArticleJournal of virology2009

A structure-guided mutational analysis of simian virus 40 large T antigen: identification of surface residues required for viral replication and transformation.

Deepika Ahuja, Abhilasha V Rathi, Amy E Greer, Xiaojiang S Chen, James M Pipas

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Deepika AhujaDepartment of Biological Sciences, University of Pittsburgh, 559 Crawford Hall, Pittsburgh, PA 15260, USA.
Abhilasha V Rathi
Amy E Greer
Xiaojiang S Chen
James M Pipas
University of Pittsburgh · USUniversity of Southern California · US

Funding

SV40 T Antigen Structure and Helicase MechanismsR01AI055926 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, XIAOJIANG S · 2004 to 2013
$4.0M
SV40 T ANTIGEN--ROLE IN VIRUS GROWTH AND TRANSFORMATIONR01CA040586 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PIPAS, JAMES M · 1985 to 2010
$2.7M
Action of the SV40 T Antigen Chaperone Machine on Tumor SuppressorsR01CA120997 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PIPAS, JAMES M · 2006 to 2011
$1.8M
GENETIC ANALYSIS OF THE SV40 LARGE TUMOR ANTIGENR37CA040586 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PIPAS, JAMES M · 1988 to 1995
–
NCI NIH HHS CA120997NCI NIH HHS CA40586NCI NIH HHS R01 CA040586NCI NIH HHS R01 CA120997NIAID NIH HHS AI055926NIAID NIH HHS R01 AI055926
6 · The paper itself

Abstract

Simian virus 40 large T antigen (TAg) transforms cells in culture and induces tumors in rodents. Genetic studies suggest that TAg interaction with the chaperone hsp70 and tumor suppressors pRb and p53 may not be sufficient to elicit complete transformation of cells. In order to identify additional cellular factors important for transformation, we designed mutations on the solvent-exposed surface of TAg. We hypothesized that surface residues would interact directly with cellular targets and that the mutation of these residues might disrupt this interaction without perturbing TAg's global structure. Using structural data, we identified 61 amino acids on the surface of TAg. Each surface amino acid was changed to an alanine. Furthermore, five patches containing clusters of charged amino acids on the surface of TAg were identified. Within these patches, we selectively mutated three to four charged amino acids and thus generated five mutants (patch mutants 1 to 5). We observed that while patch mutants 3 and 4 induced foci in REF52 cells, patch mutants 1 and 2 were deficient in focus formation. We determined that the patch 1 mutant is defective in p53 binding, thus explaining its defect in transformation. The patch 2 mutant can interact with the Rb family members and p53 like wild-type TAg but is unable to transform cells, suggesting that it is defective for action on an unknown cellular target essential for transformation. Our results suggest that the histone acetyltransferase CBP/p300 is one of the potential targets affected by the mutations in patch 2.

Indexed as

Amino Acid SubstitutionAnimalsAntigens, Viral, TumorModels, MolecularMutagenesis, Site-Directedp300-CBP-Associated Factorp300-CBP Transcription FactorsProtein BindingProtein Interaction MappingProtein Structure, TertiarySimian virus 40Tumor Suppressor Protein p53Viral Plaque AssayVirulence FactorsAntigens, Viral, Tumorp300-CBP-Associated Factorp300-CBP Transcription FactorsTumor Suppressor Protein p53Virulence Factors

Identifiers

PMID19553311
PMCPMC2738162
OpenAlexW1963974270

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.