Evidence map›Paper›PMID 19552824›Full record

ArticleVirology journal2009

Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread.

Lori R Holtz, Stacy R Finkbeiner, Guoyan Zhao, Carl D Kirkwood, Rosina Girones, James M Pipas, David Wang

Abstract read
In one paragraph

Article in Virology journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

  1. Article
  2. Gut virome in early life: origins and implications.Current opinion in virology · 2022
    Review
  3. Article
  4. Article
  5. Article
  6. Infection and Propagation of Astrovirus VA1 in Cell Culture.Current protocols in microbiology · 2019
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. NCBI viral genomes resource.Nucleic acids research · 2015
    Article
  15. Article
  16. Picornavirus--host interactions to construct viral secretory membranes.Progress in molecular biology and translational science · 2015
    Review
  17. DNA microarray for detection of gastrointestinal viruses.Journal of clinical microbiology · 2015
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lori R HoltzDepartment of Pediatrics, Washington University School of Medicine, St. Louis, Missouri 63110, USA. Holtz_L@kids.wustl.edu
Stacy R Finkbeiner
Guoyan Zhao
Carl D Kirkwood
Rosina Girones
James M Pipas
David Wang

Funding

Virology and Smallpox VaccinationsU54AI057160 · NIAID · WASHINGTON UNIVERSITY · PI RAY, RANJIT · 2003 to 2013
$80.9M
Pediatric Gastroenterology Research Training ProgramT32DK077653 · NIDDK · WASHINGTON UNIVERSITY · PI PHILLIP I TARR · 2007 to 2026
$5.8M
NIAID NIH HHS U54 AI057160NIAID NIH HHS U54AI057160NIDDK NIH HHS 5 T32 DK077653NIDDK NIH HHS T32 DK077653
6 · The paper itself

Abstract

backgroundDiarrhea is the third leading infectious cause of death worldwide and is estimated to be responsible for approximately 2 million deaths a year. While many infectious causes of diarrhea have been established, approximately 40% of all diarrhea cases are of unknown etiology. In an effort to identify novel viruses that may be causal agents of diarrhea, we used high throughput mass sequencing to analyze stool samples collected from patients with acute diarrhea.

resultsSequences with limited similarity to known picornaviruses were detected in a stool sample collected in Australia from a child with acute diarrhea. Using a combination of mass sequencing, RT-PCR, 5' RACE and 3' RACE, a 6383 bp fragment of the viral genome was sequenced. Phylogenetic analysis demonstrated that this virus was highly divergent from, but most closely related to, members of the genus Kobuvirus. We have tentatively named this novel virus klassevirus 1. We also detected klassevirus 1 by RT-PCR in a diarrhea specimen collected from a patient in St. Louis, United States as well as in untreated sewage collected in Barcelona, Spain.

conclusionKlassevirus 1 is a previously undescribed picornavirus that is globally widespread and present on at least three continents. Further investigations to determine whether klassevirus 1 is a human pathogen are needed.

Indexed as

Genome, ViralAustraliaChild, PreschoolFecesGastroenteritisHumansMolecular Sequence DataPhylogenyPicornaviridaePicornaviridae InfectionsRNA, ViralSequence Analysis, DNASewageSpainUnited StatesRNA, ViralSewage

Identifiers

PMID19552824
PMCPMC2706813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.