Evidence map›Paper›PMID 19550035›Full record

ArticleJournal of biosciences2009

Inactivation of a transgene due to transposition of insertion sequence (IS136) of Agrobacterium tumefaciens.

Preeti Rawat, Sanjeev Kumar, Deepak Pental, Pradeep Kumar Burma

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of biosciences, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Exploring the Potential of a Genome-ReducedInternational journal of molecular sciences · 2023
    Article
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Preeti RawatDepartment of Genetics, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India.
Sanjeev Kumar
Deepak Pental
Pradeep Kumar Burma

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium strains harbour insertion sequences, which are known to transpose into genomes as well as into Ti plasmids. In this study we report the inactivation of a transgene due to transposition of the A. tumefaciens insertion sequence IS136. The transposition was discovered following transformation of plant tissues, although the fidelity of the binary vector was confirmed following transformation into Agrobacterium. Such transpositions are rare but can occur and it is thus important to check the fidelity of the binary vector at different times of Agrobacterium growth in order to avoid failure in achieving transgene expression.

Indexed as

TransgenesAgrobacterium tumefaciensDNA, ComplementaryDNA PrimersDNA Transposable ElementsGenes, BacterialGenetic VectorsModels, GeneticPlantsRNATransformation, BacterialDNA, ComplementaryDNA PrimersDNA Transposable ElementsRNA

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.