Evidence map›Paper›PMID 19549893›Full record

ArticleCancer research2009

Evaluation of the 8q24 prostate cancer risk locus and MYC expression.

Mark M Pomerantz, Christine A Beckwith, Meredith M Regan, Stacia K Wyman, Gyorgy Petrovics, Yongmei Chen, Dorota J Hawksworth, Fredrick R Schumacher, Lorelei Mucci, Kathryn L Penney and 15 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed, 3 pooled it
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 3 syntheses or guidelines pooled it, 110 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Association between genetic variants in the 8q24 cancer risk regions and circulating levels of androgens and sex hormone-binding globulin.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2010
    Trial
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  6. A mechanistic view of long noncoding RNAs in cancer.Wiley interdisciplinary reviews. RNA · 2022
    Review
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 8 institutions in 3 countries.

Mark M PomerantzDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Christine A Beckwith
Meredith M Regan
Stacia K Wyman
Gyorgy Petrovics
Yongmei Chen
Dorota J Hawksworth
Fredrick R Schumacher
Lorelei Mucci
Kathryn L Penney
Meir J Stampfer
Jennifer A Chan
Kristin G Ardlie
Brian R Fritz
Rachael K Parkin
Daniel W Lin
Michelle Dyke
Paula Herman
Steve Lee
William K Oh
Philip W Kantoff
Muneesh Tewari
David G McLeod
Shiv Srivastava
Matthew L Freedman
Uniformed Services University of the Health Sciences · USHarvard University · USBroad Institute · USCancer Research Center · USDana-Farber Cancer Institute · USFred Hutch Cancer Center · USUniversity of Calgary · CAVA Puget Sound Health Care System · US

Funding

TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI RUTH D ETZIONI · 2002 to 2026
$58.1M
Tumor and Circulating Markers as Links Between Obesity and Lethal Prostate CanceP50CA090381 · NCI · DANA-FARBER CANCER INSTITUTE · PI GARRAWAY, LEVI A. · 2002 to 2017
$36.2M
Chromosome Metabolism and Cancer Training GrantT32CA009657 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 1991 to 2020
$7.6M
Fine mapping and characterization of the 8q24 prostate cancer risk locusR01CA129435 · NCI · DANA-FARBER CANCER INST · PI FREEDMAN, MATTHEW L · 2007 to 2009
$1.5M
NCI NIH HHS 5P50CA90381NCI NIH HHS 5 T32 CA09657-16NCI NIH HHS P50 CA090381NCI NIH HHS P50 CA097186NCI NIH HHS P50 CA97186NCI NIH HHS R01 CA129435NCI NIH HHS T32 CA009657
6 · The paper itself

Abstract

Polymorphisms at 8q24 are robustly associated with prostate cancer risk. The risk variants are located in nonprotein coding regions and their mechanism has not been fully elucidated. To further dissect the function of this locus, we tested two hypotheses: (a) unannotated microRNAs (miRNA) are transcribed in the region, and (b) this region is a cis-acting enhancer. Using next generation sequencing, 8q24 risk regions were interrogated for known and novel miRNAs in histologically normal radical prostatectomy tissue. We also evaluated the association between the risk variants and transcript levels of multiple genes, focusing on the proto-oncogene, MYC. RNA expression was measured in histologically normal and tumor tissue from 280 prostatectomy specimens (from 234 European American and 46 African American patients), and paired germline DNA from each individual was genotyped for six 8q24 risk single nucleotide polymorphisms. No evidence was found for significant miRNA transcription within 8q24 prostate cancer risk loci. Likewise, no convincing association between RNA expression and risk allele status was detected in either histologically normal or tumor tissue. To our knowledge, this is one of the first and largest studies to directly assess miRNA in this region and to systematically measure MYC expression levels in prostate tissue in relation to inherited risk variants. These data will help to direct the future study of this risk locus.

Indexed as

Chromosomes, Human, Pair 8Gene Expression Regulation, NeoplasticGenes, mycChromosome MappingDNA, NeoplasmDNA PrimersHumansMaleMicroRNAsPolymorphism, Single NucleotideProstatectomyProstatic NeoplasmsProto-Oncogene MasRiskRNA, NeoplasmTranscription, GeneticDNA, NeoplasmDNA PrimersMAS1 protein, humanMicroRNAsProto-Oncogene MasRNA, Neoplasm

Identifiers

PMID19549893
PMCPMC2884104
OpenAlexW2077669730

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.