Evidence map›Paper›PMID 19549859›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Amino acid polymorphisms altering the glycosylation of IL-2 do not protect from type 1 diabetes in the NOD mouse.

Masahito Kamanaka, Dan Rainbow, Karin Schuster-Gossler, Elizabeth E Eynon, Alexander V Chervonsky, Linda S Wicker, Richard A Flavell

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Excessive Th1 responses due to the absence of TGF-β signaling cause autoimmune diabetes and dysregulated Treg cell homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  5. Review
  6. Evidence that Cd101 is an autoimmune diabetes gene in nonobese diabetic mice.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
  7. Article
  8. Article
  9. Loss of parity between IL-2 and IL-21 in the NOD Idd3 locus.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Masahito KamanakaDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT 06520, USA.
Dan Rainbow
Karin Schuster-Gossler
Elizabeth E Eynon
Alexander V Chervonsky
Linda S Wicker
Richard A Flavell
Juvenile Diabetes Research Foundation · GBHoward Hughes Medical Institute · USJackson Laboratory · USUniversity of Chicago · USYale University · US

Funding

Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI Richard A Flavell · 1993 to 2026
$44.0M
The Role of IL-2 in Autoimmune DiabetesR01DK064312 · NIDDK · YALE UNIVERSITY · PI FLAVELL, RICHARD A. · 2003 to 2007
$1.6M
Howard Hughes Medical InstituteNIDDK NIH HHS DK04735NIDDK NIH HHS DK064312NIDDK NIH HHS P30 DK045735NIDDK NIH HHS P30 DK 045735-17NIDDK NIH HHS R01 DK064312Wellcome Trust 061859
6 · The paper itself

Abstract

Idd3 is one of many gene regions that affect the development of type 1 diabetes (T1D) in the nonobese diabetic (NOD) mouse. Idd3 has been localized to a 650-kb region on chromosome 3 containing the IL-2 gene. Exon 1 of the IL-2 gene is polymorphic between the susceptible NOD and the protective C57BL/6 (B6) alleles, causing multiple amino acid changes that have been proposed to be responsible for the differing glycosylation status. To address whether this coding polymorphism recapitulates the disease suppression mediated by the B6 Idd3 allele, we generated knockin mice in which exon 1 of the B6 IL-2 allele replaces the homologous region in the NOD allele. We generated these mice by targeting the NOD allele of NOD/129 F(1) ES cells. IL-2 protein from the knockin mice showed the glycosylation pattern of the B6 IL-2 isoform, confirming that the amino acid differences encoded within exon 1 affect the glycosylation of the IL-2 protein. However, unlike NOD.B6 Idd3 congenic mice, the knockin mice were not protected from T1D. Furthermore, the difference in amino acid sequence in the IL-2 protein did not affect the level of expression of IL-2. This approach provides a general method for the determination of a functional role of a given genomic sequence in a disease process. Further, our result demonstrates that the variants in exon 1 of the IL-2 gene are not responsible for T1D suppression in NOD.B6 Idd3 mice, thereby supporting the hypothesis that variants in the regulatory region affecting expression levels are causative.

Indexed as

AllelesAmino AcidsAnimalsBlotting, WesternCell LineClone CellsCrosses, GeneticDiabetes Mellitus, Type 1Embryonic Stem CellsFemaleGene Knock-In TechniquesGlycosylationInterleukin-2Intracellular SpaceMaleMiceAmino AcidsInterleukin-2

Identifiers

PMID19549859
PMCPMC2700154
OpenAlexW2170063567

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.