Evidence map›Paper›PMID 19549856›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1.

Marianne K-H Kim, Thomas J McGarry, Pilib O Broin, Jared M Flatow, Aaron A-J Golden, Jonathan D Licht

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
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  16. The transcription factorDisease models & mechanisms · 2020
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  17. RNA-Binding Proteins in Acute Leukemias.International journal of molecular sciences · 2020
    Review
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Marianne K-H KimDivision of Hematology/Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Thomas J McGarry
Pilib O Broin
Jared M Flatow
Aaron A-J Golden
Jonathan D Licht
Northwestern University · USOllscoil na Gaillimhe – University of Galway · IEPalmetto Hematology Oncology · US

Funding

WT1 and beta-catenin targets in Wilms tumorR01CA102270 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TYCKO, BENJAMIN · 2003 to 2007
$1.9M
NCI NIH HHS CA102270NCI NIH HHS R01 CA102270
6 · The paper itself

Abstract

WT1, a critical regulator of kidney development, is a tumor suppressor for nephroblastoma but in some contexts functions as an oncogene. A limited number of direct transcriptional targets of WT1 have been identified to explain its complex roles in tumorigenesis and organogenesis. In this study we performed genome-wide screening for direct WT1 targets, using a combination of ChIP-ChIP and expression arrays. Promoter regions bound by WT1 were highly G-rich and resembled the sites for a number of other widely expressed transcription factors such as SP1, MAZ, and ZNF219. Genes directly regulated by WT1 were implicated in MAPK signaling, axon guidance, and Wnt pathways. Among directly bound and regulated genes by WT1, nine were identified in the Wnt signaling pathway, suggesting that WT1 modulates a subset of Wnt components and responsive genes by direct binding. To prove the biological importance of the interplay between WT1 and Wnt signaling, we showed that WT1 blocked the ability of Wnt8 to induce a secondary body axis during Xenopus embryonic development. WT1 inhibited TCF-mediated transcription activated by Wnt ligand, wild type and mutant, stabilized beta-catenin by preventing TCF4 loading onto a promoter. This was neither due to direct binding of WT1 to the TCF binding site nor to interaction between WT1 and TCF4, but by competition of WT1 and TCF4 for CBP. WT1 interference with Wnt signaling represents an important mode of its action relevant to the suppression of tumor growth and guidance of development.

Indexed as

Genetic TestingAnimalsBase SequenceBinding SitesCell Line, TumorChromatin ImmunoprecipitationCREB-Binding ProteinDNAEmbryonic DevelopmentEmbryo, NonmammalianGene Expression ProfilingGene Expression RegulationGenomeMolecular Sequence DataOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticCREB-Binding ProteinDNATCF Transcription FactorsWnt ProteinsWT1 Proteins

Identifiers

PMID19549856
PMCPMC2708714
OpenAlexW2008305226

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.