Evidence map›Paper›PMID 19549833›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Suppressor of gamma response 1 (SOG1) encodes a putative transcription factor governing multiple responses to DNA damage.

Kaoru Yoshiyama, Phillip A Conklin, Neil D Huefner, Anne B Britt

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed, 281 citations in OpenAlex.

  1. Article
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  4. Proceedings of the National Academy of Sciences of the United States of America · 2026
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  5. Divergent Roles ofPlants (Basel, Switzerland) · 2026
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  6. Article
  7. Molecular Mechanisms ofInternational journal of molecular sciences · 2026
    Article
  8. Review
  9. Article
  10. Article
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  15. International journal of molecular sciences · 2025
    Article
  16. Article
  17. Article
  18. Genes · 2025
    Article
  19. Review
  20. ANAC044 orchestrates mitochondrial stress signaling to trigger iron-induced stem cell death in root meristems.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article

84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Kaoru YoshiyamaDepartment of Plant Biology, Graduate Group in Genetics, and Graduate Group in Plant Biology, University of California, Davis, CA 95616, USA.
Phillip A Conklin
Neil D Huefner
Anne B Britt
Institute of Genetics · CAUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Arabidopsis sog1-1 (suppressor of gamma response) mutant was originally isolated as a second-site suppressor of the radiosensitive phenotype of seeds defective in the repair endonuclease XPF. Here, we report that SOG1 encodes a putative transcription factor. This gene is a member of the NAC domain [petunia NAM (no apical meristem) and Arabidopsis ATAF1, 2 and CUC2] family (a family of proteins unique to land plants). Hundreds of genes are normally up-regulated in Arabidopsis within an hour of treatment with ionizing radiation; the induction of these genes requires the damage response protein kinase ATM, but not the related kinase ATR. Here, we find that SOG1 is also required for this transcriptional up-regulation. In contrast, the SOG1-dependent checkpoint response observed in xpf mutant seeds requires ATR, but does not require ATM. Thus, phenotype of the sog1-1 mutant mimics aspects of the phenotypes of both atr and atm mutants in Arabidopsis, suggesting that SOG1 participates in pathways governed by both of these sensor kinases. We propose that, in plants, signals related to genomic stress are processed through a single, central transcription factor, SOG1.

Indexed as

DNA DamageGamma RaysGenes, PlantArabidopsisArabidopsis ProteinsAtaxia Telangiectasia Mutated ProteinsCell CycleCell Cycle ProteinsCyclin-Dependent KinasesHistonesLoss of HeterozygosityPhosphorylationProtein Serine-Threonine KinasesQa-SNARE ProteinsTranscription FactorsTranscription, GeneticArabidopsis ProteinsAtaxia Telangiectasia Mutated ProteinsATM protein, ArabidopsisATR protein, ArabidopsisCDKB2;1 protein, ArabidopsisCell Cycle ProteinsCyclin-Dependent KinasesHistonesKNOLLE protein, ArabidopsisProtein Serine-Threonine KinasesQa-SNARE ProteinsTranscription Factors

Identifiers

PMID19549833
PMCPMC2722309
OpenAlexW2073101700

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.