Evidence map›Paper›PMID 19549820›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Opposing effects of SWI/SNF and Mi-2/NuRD chromatin remodeling complexes on epigenetic reprogramming by EBF and Pax5.

Hua Gao, Kara Lukin, Julita Ramírez, Scott Fields, Desiree Lopez, James Hagman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 140 citations in OpenAlex.

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  14. SWI/SNF chromatin remodelers in prostate cancer progression.Frontiers in epigenetics and epigenomics · 2023
    Review
  15. The Pleiotropy ofInternational journal of molecular sciences · 2022
    Review
  16. Article
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  18. Review
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hua GaoProgram in Molecular Biology, University of Colorado at Denver Health Sciences Center, Aurora, CO 80045, USA.
Kara Lukin
Julita Ramírez
Scott Fields
Desiree Lopez
James Hagman
University of Colorado Denver · USNational Jewish Health · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
THE REGULATION OF V ALPHA 7 EXPRESSING T CELLSP01AI022295 · NIAID · NATIONAL JEWISH HEALTH · PI REFAELI, YOSEF · 1985 to 2011
$11.7M
TRAINING PROGRAM IN IMMUNOLOGYT32AI007405 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Laurel L Lenz, Raul Martin Torres · 1991 to 2026
$10.5M
Function and Regulation of Early B Cell Factor (EBF)R01AI054661 · NIAID · NATIONAL JEWISH HEALTH · PI HAGMAN, JAMES R. · 2004 to 2011
$2.9M
Transcriptional Control and Lineage Commitment by Pax-5R01AI056322 · NIAID · NATIONAL JEWISH HEALTH · PI HAGMAN, JAMES R · 2003 to 2007
$1.5M
NCI NIH HHS P30 CA046934NIAID NIH HHS P01 AI022295NIAID NIH HHS P01 AI22295NIAID NIH HHS R01 AI054661NIAID NIH HHS R01 AI056322NIAID NIH HHS R01 AI54661NIAID NIH HHS R01 AI56322NIAID NIH HHS T32 AI007405NIAID NIH HHS T32-AI007405
6 · The paper itself

Abstract

Transcriptionally silent genes are maintained in inaccessible chromatin. Accessibility of these genes requires their modification by chromatin remodeling complexes (CRCs), which are recruited to promoters by sequence-specific DNA-binding proteins. Early B-cell factor (EBF), which is crucial for B-cell lineage specification, reprograms mb-1 (Ig-alpha) promoters by increasing chromatin accessibility and initiating the loss of DNA methylation. In turn, this facilitates promoter activation by Pax5. Here, we investigated the roles of ATP-dependent CRCs in these mechanisms. Fusion of EBF and Pax5 with the ligand-binding domain of ERalpha allowed for 4-hydroxytamoxifen-dependent, synergistic activation of mb-1 transcription in plasmacytoma cells. Knock-down of the SWI/SNF ATPases Brg1 and Brm inhibited transcriptional activation by EBF:ER and Pax5:ER. In contrast, knock-down of the Mi-2/NuRD complex subunit Mi-2beta greatly enhanced chromatin accessibility and mb-1 transcription in response to the activators. The reduction of Mi-2beta also propagated DNA demethylation in response to EBF:ER and Pax5:ER, resulting in fully unmethylated mb-1 promoters. In EBF- or EBF/Pax5-deficient fetal liver cells, both EBF and Pax5 were required for efficient demethylation of mb-1 promoters. Together, our data suggest that Mi-2/NuRD is important for the maintenance of hypermethylated chromatin in B cells. We conclude that SWI/SNF and Mi-2/NuRD function in opposition to enable or limit the reprogramming of genes by EBF and Pax5 during B-cell development.

Indexed as

Chromatin Assembly and DisassemblyEpigenesis, GeneticAnimalsAutoantigensB-LymphocytesCell LineChromosomal Proteins, Non-HistoneDNA HelicasesDNA MethylationHistone DeacetylasesHumansMi-2 Nucleosome Remodeling and Deacetylase ComplexMicePAX5 Transcription FactorPromoter Regions, GeneticStem CellsafimoxifeneAutoantigensCHD4 protein, humanChromosomal Proteins, Non-HistoneDNA HelicasesEbf1 protein, mouseHistone DeacetylasesMi-2 Nucleosome Remodeling and Deacetylase ComplexPAX5 protein, humanPax5 protein, mousePAX5 Transcription FactorSWI-SNF-B chromatin-remodeling complexTamoxifenTrans-ActivatorsTranscription Factors

Identifiers

PMID19549820
PMCPMC2708696
OpenAlexW2079687343

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.