Evidence map›Paper›PMID 19546213›Full record

ArticleThe Journal of biological chemistry2009

Hypoxia-inducible factor prolyl-4-hydroxylase PHD2 protein abundance depends on integral membrane anchoring of FKBP38.

Sandra Barth, Frank Edlich, Utta Berchner-Pfannschmidt, Silke Gneuss, Günther Jahreis, Philippe A Hasgall, Joachim Fandrey, Roland H Wenger, Gieri Camenisch

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Oxygen-sensing mechanisms in development and tissue repair.Development (Cambridge, England) · 2021
    Review
  5. Review
  6. Article
  7. Modulated Expression and Activities ofFrontiers in physiology · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Time-dependent inhibition of PHD2.Bioscience reports · 2017
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. FK506-Binding Proteins and Their Diverse Functions.Current molecular pharmacology · 2015
    Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Sandra BarthInstitute of Physiology and Zürich Center for Integrative Human Physiology (ZIHP), University of Zürich, CH-8057 Zürich, Switzerland.
Frank Edlich
Utta Berchner-Pfannschmidt
Silke Gneuss
Günther Jahreis
Philippe A Hasgall
Joachim Fandrey
Roland H Wenger
Gieri Camenisch
University of Duisburg-Essen · DEMax Planck Research Unit for Enzymology of Protein Folding · DEUniversity of Zurich · CHSwiss Integrative Center for Human Health · CHZTE (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prolyl-4-hydroxylase domain (PHD) proteins are 2-oxoglutarate and dioxygen-dependent enzymes that mediate the rapid destruction of hypoxia-inducible factor alpha subunits. Whereas PHD1 and PHD3 proteolysis has been shown to be regulated by Siah2 ubiquitin E3 ligase-mediated polyubiquitylation and proteasomal destruction, protein regulation of the main oxygen sensor responsible for hypoxia-inducible factor alpha regulation, PHD2, remained unknown. We recently reported that the FK506-binding protein (FKBP) 38 specifically interacts with PHD2 and determines PHD2 protein stability in a peptidyl-prolyl cis-trans isomerase-independent manner. Using peptide array binding assays, fluorescence spectroscopy, and fluorescence resonance energy transfer analysis, we defined a minimal linear glutamate-rich PHD2 binding domain in the N-terminal part of FKBP38 and showed that this domain forms a high affinity complex with PHD2. Vice versa, PHD2 interacted with a non-linear N-terminal motif containing the MYND (myeloid, Nervy, and DEAF-1)-type Zn(2+) finger domain with FKBP38. Biochemical fractionation and immunofluorescence analysis demonstrated that PHD2 subcellular localization overlapped with FKBP38 in the endoplasmic reticulum and mitochondria. An additional fraction of PHD2 was found in the cytoplasm. In cellulo PHD2/FKBP38 association, as well as regulation of PHD2 protein abundance by FKBP38, is dependent on membrane- anchored FKBP38 localization mediated by the C-terminal transmembrane domain. Mechanistically our data indicate that PHD2 protein stability is regulated by a ubiquitin-independent proteasomal pathway involving FKBP38 as adaptor protein that mediates proteasomal interaction. We hypothesize that FKBP38-bound PHD2 is constantly degraded whereas cytosolic PHD2 is stable and able to function as an active prolyl-4-hydroxylase.

Indexed as

AnimalsCell LineCell Line, TumorEndoplasmic ReticulumFluorescence Resonance Energy TransferHeLa CellsHumansHypoxia-Inducible Factor-Proline DioxygenasesImmunoblottingIntracellular MembranesMiceMicroscopy, FluorescenceMitochondriaProcollagen-Proline DioxygenaseProtein BindingProtein Structure, TertiaryEGLN1 protein, humanEgln1 protein, mouseFKBP8 protein, humanFkbp8 protein, mouseHypoxia-Inducible Factor-Proline DioxygenasesProcollagen-Proline DioxygenaseTacrolimus Binding Proteins

Identifiers

PMID19546213
PMCPMC2755711
OpenAlexW1998938284

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.