Evidence map›Paper›PMID 19546212›Full record

ArticleThe Journal of biological chemistry2009

WaaA of the hyperthermophilic bacterium Aquifex aeolicus is a monofunctional 3-deoxy-D-manno-oct-2-ulosonic acid transferase involved in lipopolysaccharide biosynthesis.

Uwe Mamat, Helgo Schmidt, Eva Munoz, Buko Lindner, Koichi Fukase, Anna Hanuszkiewicz, Jing Wu, Timothy C Meredith, Ronald W Woodard, Rolf Hilgenfeld and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

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  7. A study of Rose Bengal against a 2-keto-3-deoxy-d-Journal of enzyme inhibition and medicinal chemistry · 2020
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  15. Article
  16. Crystal structure of LpxK, the 4'-kinase of lipid A biosynthesis and atypical P-loop kinase functioning at the membrane interface.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  17. Structural and mechanistic analysis of the membrane-embedded glycosyltransferase WaaA required for lipopolysaccharide synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Uwe MamatDivisions of Structural Biochemistry, D-23845 Borstel, Germany.
Helgo SchmidtDivisions of Structural Biochemistry, D-23845 Borstel, Germany; Biochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, D-23538 Lübeck, Germany.
Eva Munozthe Institutes of Chemistry, D-23538 Lübeck, Germany.
Buko LindnerImmunochemistry, Research Center Borstel, Leibniz-Center for Medicine and Biosciences, D-23845 Borstel, Germany.
Koichi FukaseDepartment of Chemistry, Graduate School of Science, Osaka University, Osaka 560-0043, Japan.
Anna HanuszkiewiczDivisions of Structural Biochemistry, D-23845 Borstel, Germany.
Jing WuDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan 48109.
Timothy C MeredithDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan 48109.
Ronald W WoodardDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan 48109.
Rolf HilgenfeldBiochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, D-23538 Lübeck, Germany.
Jeroen R MestersBiochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, D-23538 Lübeck, Germany.
Otto HolstDivisions of Structural Biochemistry, D-23845 Borstel, Germany.
Research Center Borstel - Leibniz Lung Center · DEUniversity of Lübeck · DEUniversity of Michigan–Ann Arbor · USOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hyperthermophile Aquifex aeolicus belongs to the deepest branch in the bacterial genealogy. Although it has long been recognized that this unique Gram-negative bacterium carries genes for different steps of lipopolysaccharide (LPS) formation, data on the LPS itself or detailed knowledge of the LPS pathway beyond the first committed steps of lipid A and 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) synthesis are still lacking. We now report the functional characterization of the thermostable Kdo transferase WaaA from A. aeolicus and provide evidence that the enzyme is monofunctional. Compositional analysis and mass spectrometry of purified A. aeolicus LPS, showing the incorporation of a single Kdo residue as an integral component of the LPS, implicated a monofunctional Kdo transferase in LPS biosynthesis of A. aeolicus. Further, heterologous expression of the A. aeolicus waaA gene in a newly constructed Escherichia coli DeltawaaA suppressor strain resulted in synthesis of lipid IVA precursors substituted with one Kdo sugar. When highly purified WaaA of A. aeolicus was subjected to in vitro assays using mass spectrometry for detection of the reaction products, the enzyme was found to catalyze the transfer of only a single Kdo residue from CMP-Kdo to differently modified lipid A acceptors. The Kdo transferase was capable of utilizing a broad spectrum of acceptor substrates, whereas surface plasmon resonance studies indicated a high selectivity for the donor substrate.

Indexed as

BacteriaCarbohydratesElectrophoresis, Polyacrylamide GelEscherichia coliEscherichia coli ProteinsLipidsLipopolysaccharidesModels, BiologicalNucleotidyltransferasesSalmonellaSpectrometry, Mass, Electrospray IonizationSurface Plasmon ResonanceTemperatureTransferases3-deoxy-D-manno-octulosonate transferase3-deoxy-manno-octulosonate cytidyltransferaseCarbohydratesEscherichia coli ProteinsLipidsLipopolysaccharidesNucleotidyltransferasesTransferases

Identifiers

PMID19546212
PMCPMC2755949
OpenAlexW1988668596

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.