Evidence map›Paper›PMID 19546120›Full record

ArticleThe Journal of heredity

Chromosomal mapping of canine-derived BAC clones to the red fox and American mink genomes.

Anna V Kukekova, Nadegda V Vorobieva, Violetta R Beklemisheva, Jennifer L Johnson, Svetlana V Temnykh, Dmitry V Yudkin, Lyudmila N Trut, Catherine Andre, Francis Galibert, Gustavo D Aguirre and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of heredity. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Genetics of behavior in the silver fox.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Anna V KukekovaJames A. Baker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA. avk5@cornell.edu
Nadegda V Vorobieva
Violetta R Beklemisheva
Jennifer L Johnson
Svetlana V Temnykh
Dmitry V Yudkin
Lyudmila N Trut
Catherine Andre
Francis Galibert
Gustavo D Aguirre
Gregory M Acland
Alexander S Graphodatsky
University of Pennsylvania · USCornell University · USInstitut de génétique et de développement de Rennes · FRInstitute of Cytology and Genetics · RU

Funding

MODELS OF HEREDITY RETINAL DEGENERATIONR01EY006855 · NEI · UNIVERSITY OF PENNSYLVANIA · PI GUSTAVO David AGUIRRE, William A. Beltran · 1992 to 2026
$20.7M
Molecular Mechanisms of Social BehaviorR01MH077811 · NIMH · CORNELL UNIVERSITY · PI KUKEKOVA, ANNA · 2007 to 2010
$1.3M
Genetic architecture of the mammalian (canid) skeleton: The silver fox (V. vulpesR03TW008098 · FIC · INSTITUTE OF CYTOLOGY AND GENETICS · PI TRUT, LYUDMILA N. · 2008 to 2010
$97k
FIC NIH HHS R03 TW008098FIC NIH HHS R03TW008098NEI NIH HHS EY006855NEI NIH HHS R01 EY006855NIMH NIH HHS MH077811NIMH NIH HHS R01 MH077811
6 · The paper itself

Abstract

High-quality sequencing of the dog (Canis lupus familiaris) genome has enabled enormous progress in genetic mapping of canine phenotypic variation. The red fox (Vulpes vulpes), another canid species, also exhibits a wide range of variation in coat color, morphology, and behavior. Although the fox genome has not yet been sequenced, canine genomic resources have been used to construct a meiotic linkage map of the red fox genome and begin genetic mapping in foxes. However, a more detailed gene-specific comparative map between the dog and fox genomes is required to establish gene order within homologous regions of dog and fox chromosomes and to refine breakpoints between homologous chromosomes of the 2 species. In the current study, we tested whether canine-derived gene-containing bacterial artificial chromosome (BAC) clones can be routinely used to build a gene-specific map of the red fox genome. Forty canine BAC clones were mapped to the red fox genome by fluorescence in situ hybridization (FISH). Each clone was uniquely assigned to a single fox chromosome, and the locations of 38 clones agreed with cytogenetic predictions. These results clearly demonstrate the utility of FISH mapping for construction of a whole-genome gene-specific map of the red fox. The further possibility of using canine BAC clones to map genes in the American mink (Mustela vison) genome was also explored. Much lower success was obtained for this more distantly related farm-bred species, although a few BAC clones were mapped to the predicted chromosomal locations.

Indexed as

AnimalsChromosome MappingChromosomes, Artificial, BacterialDogsFoxesGenomeGenomicsIn Situ Hybridization, FluorescenceMink

Identifiers

PMID19546120
PMCPMC3139363
OpenAlexW2130185662

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.