Evidence map›Paper›PMID 19546099›Full record

ArticleJournal of medical genetics2010

A de novo 1p34.2 microdeletion identifies the synaptic vesicle gene RIMS3 as a novel candidate for autism.

Ravinesh A Kumar, Jyotsna Sudi, Timothy D Babatz, Camille W Brune, Donald Oswald, Mayon Yen, Norma J Nowak, Edwin H Cook, Susan L Christian, William B Dobyns

Abstract readCase Reports
In one paragraph

Article in Journal of medical genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. A Multifaceted Giant Protein Microtubule-Actin Cross-Linking Factor 1.International journal of molecular sciences · 2025
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  10. Review
  11. Article
  12. Article
  13. Review
  14. Bio-collections in autism research.Molecular autism · 2017
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ravinesh A KumarDepartment of Human Genetics, University of Chicago,Chicago, Illinois 60637, USA.
Jyotsna Sudi
Timothy D Babatz
Camille W Brune
Donald Oswald
Mayon Yen
Norma J Nowak
Edwin H Cook
Susan L Christian
William B Dobyns

Funding

The Genetic Basis of Mid-Hindbrain MalformationsR01NS050375 · NINDS · UNIVERSITY OF MINNESOTA · PI DOBYNS, WILLIAM B. · 2005 to 2019
$9.9M
Center for Genomic and Phenomic Studies in AutismU24MH081810 · NIMH · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LAJONCHERE, CLARA M · 2007 to 2011
$8.3M
Genomic Imbalances in AutismR01NS051812 · NINDS · UNIVERSITY OF CHICAGO · PI CHRISTIAN, SUSAN LYNN · 2005 to 2008
$2.1M
Autism Speaks AS1583NCI NIH HHS P30 CA01605632NIMH NIH HHS 1U24MH081810NIMH NIH HHS U24 MH081810NINDS NIH HHS R01 NS050375NINDS NIH HHS R01-NS050375NINDS NIH HHS R01 NS051812NINDS NIH HHS R01-NS051812
6 · The paper itself

Abstract

backgroundA child with autism and mild microcephaly was found to have a de novo 3.3 Mb microdeletion on chromosome 1p34.2p34.3. The hypothesis is tested that this microdeletion contains one or more genes that underlie the autism phenotype in this child and in other children with autism spectrum disorders.

methodsTo search for submicroscopic chromosomal rearrangements in the child, array comparative genomic hybridisation (aCGH) was performed using a 19 K whole genome human bacterial artificial chromosome (BAC) array and the Illumina 610-Quad BeadChip microarray. Ingenuity pathway analysis (IPA) was used to construct functional biological networks to identify candidate autism genes. To identify putative functional variants in candidate genes, mutation screening was performed using polymerase chain reaction (PCR) based Sanger sequencing in 512 unrelated autism patients and 462 control subjects.

resultsA de novo 3.3 Mb deletion containing approximately 43 genes in chromosome 1p34.2p34.3 was identified and subsequently confirmed using fluorescence in situ hybridization (FISH). Literature review and bioinformatics analyses identified Regulating Synaptic Membrane Exocytosis 3 (RIMS3) as the most promising autism candidate gene. Mutation screening of this gene in autism patients identified five inherited coding variants, including one (p.E177A) that segregated with the autism phenotype in a sibship, was predicted to be deleterious, and was absent in 1161 controls.

conclusionsThis case report and mutation screening data suggest that RIMS3 is an autism causative or contributory gene. Functional studies of RIMS3 variants such as p.E177A should provide additional insight into the role of synaptic proteins in the pathophysiology of autism.

Indexed as

Sequence DeletionAmino Acid SubstitutionAutistic DisorderChildChild, PreschoolComparative Genomic HybridizationDatabases, GeneticDNA Mutational AnalysisFemaleGenetic Predisposition to DiseaseHumansMaleMembrane Transport ProteinsMutation, MissenseNerve Tissue ProteinsMembrane Transport ProteinsNerve Tissue ProteinsRIMS3 protein, human

Identifiers

PMID19546099
PMCPMC2921284

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.