Evidence map›Paper›PMID 19543527›Full record

ArticlePloS one2009

Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus.

Fabienne Ripoll, Sophie Pasek, Chantal Schenowitz, Carole Dossat, Valérie Barbe, Martin Rottman, Edouard Macheras, Beate Heym, Jean-Louis Herrmann, Mamadou Daffé and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 219 papers.

0numbers the graph read from it
0cells of the map it votes in
219citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

219 citing papers in PubMed, 373 citations in OpenAlex.

  1. Article
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  8. Journal of bacteriology · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. A Frameshift Mutation in the MethyltransferaseComputational and structural biotechnology journal · 2026
    Article
  13. Challenges in the Diagnosis and Treatment of Mycobacterium abscessus Infections.Revista da Sociedade Brasileira de Medicina Tropical · 2026
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. International journal of molecular sciences · 2025
    Review
  19. Article
  20. Article

159 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Fabienne RipollEA3647, UFR de médecine Paris Ile-de-France Ouest, Université de Versailles St-Quentin, Garches, France.
Sophie Pasek
Chantal Schenowitz
Carole Dossat
Valérie Barbe
Martin Rottman
Edouard Macheras
Beate Heym
Jean-Louis Herrmann
Mamadou Daffé
Roland Brosch
Jean-Loup Risler
Jean-Louis Gaillard
Université de Versailles Saint-Quentin-en-Yvelines · FRGenoscope · FRCentre National de la Recherche Scientifique · FRInstitut de Pharmacologie et de Biologie Structurale · FRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium abscessus is an emerging rapidly growing mycobacterium (RGM) causing a pseudotuberculous lung disease to which patients with cystic fibrosis (CF) are particularly susceptible. We report here its complete genome sequence. The genome of M. abscessus (CIP 104536T) consists of a 5,067,172-bp circular chromosome including 4920 predicted coding sequences (CDS), an 81-kb full-length prophage and 5 IS elements, and a 23-kb mercury resistance plasmid almost identical to pMM23 from Mycobacterium marinum. The chromosome encodes many virulence proteins and virulence protein families absent or present in only small numbers in the model RGM species Mycobacterium smegmatis. Many of these proteins are encoded by genes belonging to a "mycobacterial" gene pool (e.g. PE and PPE proteins, MCE and YrbE proteins, lipoprotein LpqH precursors). However, many others (e.g. phospholipase C, MgtC, MsrA, ABC Fe(3+) transporter) appear to have been horizontally acquired from distantly related environmental bacteria with a high G+C content, mostly actinobacteria (e.g. Rhodococcus sp., Streptomyces sp.) and pseudomonads. We also identified several metabolic regions acquired from actinobacteria and pseudomonads (relating to phenazine biosynthesis, homogentisate catabolism, phenylacetic acid degradation, DNA degradation) not present in the M. smegmatis genome. Many of the "non mycobacterial" factors detected in M. abscessus are also present in two of the pathogens most frequently isolated from CF patients, Pseudomonas aeruginosa and Burkholderia cepacia. This study elucidates the genetic basis of the unique pathogenicity of M. abscessus among RGM, and raises the question of similar mechanisms of pathogenicity shared by unrelated organisms in CF patients.

Indexed as

Genome, BacterialAnti-Bacterial AgentsChromosomes, BacterialCystic FibrosisDNADrug Resistance, BacterialGenetic TechniquesHumansModels, GeneticMycobacteriumMycobacterium smegmatisPhenylacetatesPhylogenyVirulenceVirulence FactorsAnti-Bacterial AgentsDNAPhenylacetatesphenylacetic acidVirulence Factors

Identifiers

PMID19543527
PMCPMC2694998
OpenAlexW2078178166

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.