Evidence map›Paper›PMID 19542331›Full record

ArticleApplied and environmental microbiology2009

Role of P450 monooxygenases in the degradation of the endocrine-disrupting chemical nonylphenol by the white rot fungus Phanerochaete chrysosporium.

Venkataramanan Subramanian, Jagjit S Yadav

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Venkataramanan SubramanianEnvironmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0056, USA.
Jagjit S Yadav
University of Cincinnati · US

Funding

REPRODUCTIVE AND DEVELOPMENTAL TOXICOLOGY RESEARCHP30ES006096 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 1992 to 2022
$35.4M
FUNGAL P450 SYSTEMS IN BIODEGRADATION OF HIGHER PAHS-R01ES15543-01R01ES015543 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 2008 to 2011
$1.1M
XENOBIOTIC-OXIDIZING P450 SYSTEM IN A WHITE ROT FUNGUSR01ES010210 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 2001 to 2003
$689k
NIEHS NIH HHS ES015543NIEHS NIH HHS ES10210NIEHS NIH HHS P30 ES006096NIEHS NIH HHS P30-ES06096NIEHS NIH HHS R01 ES010210NIEHS NIH HHS R01 ES015543
6 · The paper itself

Abstract

The white rot fungus Phanerochaete chrysosporium extensively degraded the endocrine disruptor chemical nonylphenol (NP; 100% of 100 ppm) in both nutrient-limited cultures and nutrient-sufficient cultures. The P450 enzyme inhibitor piperonyl butoxide caused significant inhibition (approximately 75%) of the degradation activity in nutrient-rich malt extract (ME) cultures but no inhibition in defined low-nitrogen (LN) cultures, indicating an essential role of P450 monooxygenase(s) in NP degradation under nutrient-rich conditions. A genome-wide analysis using our custom-designed P450 microarray revealed significant induction of multiple P450 monooxygenase genes by NP: 18 genes were induced (2- to 195-fold) under nutrient-rich conditions, 17 genes were induced (2- to 6-fold) in LN cultures, and 3 were induced under both nutrient-rich and LN conditions. The P450 genes Pff 311b (corresponding to protein identification number [ID] 5852) and Pff 4a (protein ID 5001) showed extraordinarily high levels of induction (195- and 167-fold, respectively) in ME cultures. The P450 oxidoreductase (POR), glutathione S-transferase (gst), and cellulose metabolism genes were also induced in ME cultures. In contrast, certain metabolic genes, such as five of the peroxidase genes, showed partial downregulation by NP. This study provides the first evidence for the involvement of P450 enzymes in NP degradation by a white rot fungus and the first genome-wide identification of specific P450 genes responsive to an environmentally significant toxicant.

Indexed as

Culture MediaCytochrome P-450 Enzyme InhibitorsCytochrome P-450 Enzyme SystemDown-RegulationEndocrine DisruptorsEnzyme InhibitorsGene Expression ProfilingGene Expression Regulation, EnzymologicGene Expression Regulation, FungalMixed Function OxygenasesOligonucleotide Array Sequence AnalysisPhanerochaetePhenolsPiperonyl ButoxideUp-RegulationCulture MediaCytochrome P-450 Enzyme InhibitorsCytochrome P-450 Enzyme SystemEndocrine DisruptorsEnzyme InhibitorsMixed Function OxygenasesnonylphenolPhenolsPiperonyl Butoxide

Identifiers

PMID19542331
PMCPMC2737932
OpenAlexW2076842645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.