Evidence map›Paper›PMID 19542007›Full record

ArticleMicrobiology (Reading, England)2009

Illumination stimulates cAMP receptor protein-dependent transcriptional activation from regulatory regions containing class I and class II promoter elements in Synechocystis sp. PCC 6803.

Jennifer Hedger, Peter C Holmquist, Kimberly A Leigh, Kumuda Saraff, Christina Pomykal, Michael L Summers

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Regulatory Tools for Controlling Gene Expression in Cyanobacteria.Advances in experimental medicine and biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jennifer HedgerCalifornia State University Northridge, Department of Biology, 18111 Nordhoff St, Northridge, CA 91330, USA.
Peter C HolmquistCalifornia State University Northridge, Department of Biology, 18111 Nordhoff St, Northridge, CA 91330, USA.
Kimberly A LeighAmgen, Thousand Oaks, CA 91320, USA.
Kumuda SaraffCalifornia State University Northridge, Department of Biology, 18111 Nordhoff St, Northridge, CA 91330, USA.
Christina PomykalCalifornia State University Northridge, Department of Biology, 18111 Nordhoff St, Northridge, CA 91330, USA.
Michael L SummersCalifornia State University Northridge, Department of Biology, 18111 Nordhoff St, Northridge, CA 91330, USA.
California State University, Northridge · USAmgen (United States) · US

Funding

TRANSITION TO ADULTHOOD OF PHYSICALLY CHALLENGED YOUTHS06GM048680 · NIGMS · CALIFORNIA STATE UNIVERSITY NORTHRIDGE · PI DE BELLARD, MARIA ELENA · 1993 to 2009
$14.0M
NIGMS NIH HHS 2 SO6 GM048680NIGMS NIH HHS S06 GM048680
6 · The paper itself

Abstract

The cAMP receptor protein (Crp) is a global transcriptional regulator that binds sequence-specific promoter elements when associated with cAMP. In the motile cyanobacterium Synechocystis sp. strain PCC 6803, intracellular cAMP increases when dark-adapted cells are illuminated. Previous work has established that Crp binds proposed Crp target sites upstream of slr1351 (murF), sll1874 (chlA(II)), sll1708 (narL), slr0442 and sll1268 in vitro, and that slr0442 is downregulated in a crp mutant during photoautotrophic growth. To identify additional Crp target genes in Synechocystis, 11 different Crp binding sites proposed during a previous computational survey were tested for in vitro sequence-specific binding and crp-dependent transcription. The results indicate that murF, chlA(II) and slr0442 can be added as 'target genes of Sycrp1' in Synechocystis. Promoter mapping of the targets revealed the same close association of RNA polymerase and Crp as that found in Escherichia coli class I and class II Crp-regulated promoters, thereby strongly suggesting similar mechanisms of transcriptional activation.

Indexed as

LuminescencePromoter Regions, GeneticSynechocystisTranscriptional ActivationBacterial ProteinsBase SequenceDNA, BacterialEnvironmentGene Expression Regulation, BacterialGenes, ReporterMolecular Sequence DataPeptide SynthasesProtein BindingReceptors, Cyclic AMPTranscription Initiation SiteBacterial ProteinsDNA, BacterialPeptide SynthasesReceptors, Cyclic AMPSYCRP1 protein, SynechocystisUDP-N-acetylmuramoylalanyl-D-glutamyllysine-D-alanyl-D-alanine ligase

Identifiers

PMID19542007
PMCPMC2888174
OpenAlexW2071443105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.