Evidence map›Paper›PMID 19540174›Full record

ArticleDNA repair2009

Increased sensitivity of subtelomeric regions to DNA double-strand breaks in a human cancer cell line.

Oliver Zschenker, Avanti Kulkarni, Douglas Miller, Gloria E Reynolds, Marine Granger-Locatelli, Géraldine Pottier, Laure Sabatier, John P Murnane

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Oliver ZschenkerDepartment of Radiation Oncology, University of California, 1855 Folsom St., MCB200, San Francisco, CA 94103, USA.
Avanti Kulkarni
Douglas Miller
Gloria E Reynolds
Marine Granger-Locatelli
Géraldine Pottier
Laure Sabatier
John P Murnane
University of California, San Francisco · USCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FR

Funding

Chromosome instability resulting from double-strand breaks near telomeresR01CA120205 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MURNANE, JOHN P. · 2006 to 2015
$2.6M
NCI NIH HHS CA12025NCI NIH HHS R01 CA120205
6 · The paper itself

Abstract

We previously reported that a single DNA double-strand break (DSB) near a telomere in mouse embryonic stem cells can result in chromosome instability. We have observed this same type of instability as a result of spontaneous telomere loss in human tumor cell lines, suggesting that a deficiency in the repair of DSBs near telomeres has a role in chromosome instability in human cancer. We have now investigated the frequency of the chromosome instability resulting from DSBs near telomeres in the EJ-30 human bladder carcinoma cell line to determine whether subtelomeric regions are sensitive to DSBs, as previously reported in yeast. These studies involved determining the frequency of large deletions, chromosome rearrangements, and chromosome instability resulting from I-SceI endonuclease-induced DSBs at interstitial and telomeric sites. As an internal control, we also analyzed the frequency of small deletions, which have been shown to be the most common type of mutation resulting from I-SceI-induced DSBs at interstitial sites. The results demonstrate that although the frequency of small deletions is similar at interstitial and telomeric DSBs, the frequency of large deletions and chromosome rearrangements is much greater at telomeric DSBs. DSB-induced chromosome rearrangements at telomeric sites also resulted in prolonged periods of chromosome instability. Telomeric regions in mammalian cells are therefore highly sensitive to DSBs, suggesting that spontaneous or ionizing radiation-induced DSBs at these locations may be responsible for many of the chromosome rearrangements that are associated with human cancer.

Indexed as

DNA Breaks, Double-StrandedBase SequenceBlotting, SouthernCell Line, TumorChromosomal InstabilityChromosomes, HumanClone CellsDeoxyribonucleases, Type II Site-SpecificGanciclovirGene RearrangementGene SilencingHumansMolecular Sequence DataPlasmidsPolymerase Chain ReactionRecombination, GeneticDeoxyribonucleases, Type II Site-SpecificGanciclovirThymidine Kinase

Identifiers

PMID19540174
PMCPMC2901176
OpenAlexW2076875009

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.