Evidence map›Paper›PMID 19535337›Full record

ArticleThe Journal of biological chemistry2009

Molecular mimicry in innate immunity: crystal structure of a bacterial TIR domain.

Siew Leong Chan, Lieh Yoon Low, Simon Hsu, Sheng Li, Tong Liu, Eugenio Santelli, Gaelle Le Negrate, John C Reed, Virgil L Woods, Jaime Pascual

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 85 citations in OpenAlex.

  1. Trial
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  9. Regulation of Expression of thePathogens (Basel, Switzerland) · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Structural characterization of Treponema pallidum Tp0225 reveals an unexpected leucine-rich repeat architecture.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  14. International journal of microbiology · 2018
    Article
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Siew Leong ChanInflammation and Infectious Diseases Center and Cancer Center, Burnham Institute for Medical Research, La Jolla, California 92037, USA.
Lieh Yoon Low
Simon Hsu
Sheng Li
Tong Liu
Eugenio Santelli
Gaelle Le Negrate
John C Reed
Virgil L Woods
Jaime Pascual
Sanford Burnham Prebys Medical Discovery Institute · USUniversity of California, San Diego · US

Funding

Virulence Factors and Cell DeathP01AI055789 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI SMITH, JEFFREY W · 2004 to 2008
$15.5M
Enhanced Crystallography of Cancer-Implicated ProteinsR33CA099835 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WOODS, VIRGIL L · 2004 to 2006
$1.8M
Bacterial infection through TIR-like virulent factorsR21AI065602 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI PASCUAL, JAIME · 2005 to 2006
$520k
Hydrogen Deuterium Exchange Mapping of Chemokine Receptor Complex InterfacesR21AI076961 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HANDEL, TRACY M, WOODS, VIRGIL L · 2008 to 2009
$425k
DXMS-Facilitated Membrane Protein Construct Design/CancerR21CA118595 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WOODS, VIRGIL L · 2006 to 2007
$420k
Enhanced Crystallography of Cancer-Implicated ProteinsR21CA099835 · NCI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI WOODS, VIRGIL L · 2003 to 2003
$142k
NCI NIH HHS CA099835NCI NIH HHS CA118595NCI NIH HHS R21 CA099835NCI NIH HHS R21 CA118595NCI NIH HHS R33 CA099835NIAID NIH HHS AI076961NIAID NIH HHS P01 AI055789NIAID NIH HHS P01AI055789NIAID NIH HHS R21 AI065602NIAID NIH HHS R21AI065602NIAID NIH HHS R21 AI076961
6 · The paper itself

Abstract

Macrophages detect pathogen infection via the activation of their plasma membrane-bound Toll-like receptor proteins (TLRs). The heterotypic interaction between the Toll/interleukin-1 receptor (TIR) domains of TLRs and adaptor proteins, like Myeloid differentiation primary response gene 88 (MyD88), is the first intracellular step in the signaling pathway of the mammalian innate immune response. The hetero-oligomerization of the TIRs of the receptor and adaptor brings about the activation of the transcription factor NF-kappaB, which regulates the synthesis of pro-inflammatory cytokines. Here, we report the first crystal structure of a bacterial TIR domain solved at 2.5 A resolution. The three-dimensional fold of Paracoccus denitrificans TIR is identical to that observed for the TIR of human TLRs and MyD88 proteins. The structure shows a unique dimerization interface involving the DD-loop and EE-loop residues, whereas leaving the BB-loop highly exposed. Peptide amide hydrogen-deuterium exchange mass spectrometry also reveals that the same region is used for dimerization in solution and in the context of the full-length protein. These results, together with a functional interaction between P. denitrificans TIR and MyD88 visualized in a co-immunoprecipitation assay, further substantiate the model that bacterial TIR proteins adopt structural mimicry of the host active receptor TIR domains to interfere with the signaling of TLRs and their adaptors to decrease the inflammatory response.

Indexed as

Bacterial ProteinsCrystallography, X-RayCytokinesDimerizationEscherichia coliHumansImmunoprecipitationInflammationModels, BiologicalModels, MolecularMolecular ConformationMyeloid Differentiation Factor 88Paracoccus denitrificansProtein Structure, TertiaryToll-Like ReceptorsBacterial ProteinsCytokinesMYD88 protein, humanMyeloid Differentiation Factor 88Toll-Like Receptors

Identifiers

PMID19535337
PMCPMC2755863
OpenAlexW2074009076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.