Evidence map›Paper›PMID 19530248›Full record

ArticleProtein science : a publication of the Protein Society2009

A chimeric mechanism for polyvalent trans-phosphorylation of PKA by PDK1.

Robert A Romano, Natarajan Kannan, Alexandr P Kornev, Craig J Allison, Susan S Taylor

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. An essentialFrontiers in parasitology · 2023
    Article
  3. The Tails of Protein Kinase A.Molecular pharmacology · 2022
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Discovery of Allostery in PKA Signaling.Biophysical reviews · 2015
    Article
  10. Article
  11. Dynamic architecture of a protein kinase.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Article
  13. Article
  14. PKA: lessons learned after twenty years.Biochimica et biophysica acta · 2013
    Review
  15. Article
  16. Assembly of allosteric macromolecular switches: lessons from PKA.Nature reviews. Molecular cell biology · 2012
    Review
  17. Design principles underpinning the regulatory diversity of protein kinases.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Robert A RomanoDepartment of Chemistry, University of California San Diego, La Jolla, California 92093-0654, USA.
Natarajan Kannan
Alexandr P Kornev
Craig J Allison
Susan S Taylor
University of California, San Diego · USUniversity of Georgia · US

Funding

Protein Kinase: Primary Structure and cAMP InteractionsR01GM019301 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TAYLOR, SUSAN S. · 1985 to 2013
$3.4M
PROTEIN KINASE: PRIMARY STRUCTURE AND CAMP INTERACTIONR37GM019301 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI TAYLOR, SUSAN S · 1995 to 2004
$2.0M
NIGMS NIH HHS GM19301
6 · The paper itself

Abstract

Phosphorylation on the activation loop of AGC kinases is typically mediated by PDK1. The precise mechanism for this in-trans phosphorylation is unknown; however, docking of a hydrophobic (HF) motif in the C-tail of the substrate kinase onto the N-lobe of PDK1 is likely an essential step. Using a peptide array of PKA to identify other PDK1-interacting sites, we discovered a second AGC-conserved motif in the C-tail that interacts with PDK1. Since this motif [FD(X)(1-2)Y/F] lies in the active site tether region and in PKA contributes to ATP binding, we call it the Adenosine binding (Ade) motif. The Ade motif is conserved as a PDK1-interacting site in Akt and PRK2, and we predict it will be a PDK1-interacting site for most AGC kinases. In PKA, the HF motif is only recognized when the turn motif Ser338 is phosphorylated, possibly serving as a phosphorylation "switch" that regulates how the Ade and HF motifs interact with PDK1. These results demonstrate that the extended AGC C-tail serves as a polyvalent element that trans-regulates PDK1 for catalysis. Modeling of the PKA C-tail onto PDK1 structure creates two chimeric sites; the ATP binding pocket, which is completed by the Ade motif, and the C-helix, which is positioned by the HF motif. Together, they demonstrate substrate-assisted catalysis involving two kinases that have co-evolved as symbiotic partners. The highly regulated turn motifs are the most variable part of the AGC C-tail. Elucidating the highly regulated cis and trans functions of the AGC tail is a significant future challenge.

Indexed as

AdenosineAmino Acid SequenceCyclic AMP-Dependent Protein KinasesModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedPhosphorylationProtein BindingProtein ConformationProtein Interaction Domains and MotifsProtein Interaction MappingProtein Serine-Threonine KinasesPyruvate Dehydrogenase Acetyl-Transferring KinaseSequence AlignmentStereoisomerismAdenosineCyclic AMP-Dependent Protein KinasesProtein Serine-Threonine KinasesPyruvate Dehydrogenase Acetyl-Transferring Kinase

Identifiers

PMID19530248
PMCPMC2775216
OpenAlexW1951802364

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.