Evidence map›Paper›PMID 19528318›Full record

ArticleGenes & development2009

Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways.

Benoît Pinson, Sabine Vaur, Isabelle Sagot, Fanny Coulpier, Sophie Lemoine, Bertrand Daignan-Fornier

Abstract read
In one paragraph

Article in Genes & development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Article
  2. Transcriptome analysis ofMicrobiology spectrum · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. The Histone Deacetylases Hst1 and Rpd3 Integrate De Novo NADInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. NADFrontiers in molecular biosciences · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Benoît PinsonUniversité de Bordeaux, Institut de Biochimie et Génétique Cellulaires, Bordeaux 33076, France.
Sabine Vaur
Isabelle Sagot
Fanny Coulpier
Sophie Lemoine
Bertrand Daignan-Fornier

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cells use strategic metabolites to sense the metabolome and accordingly modulate gene expression. Here, we show that the purine and phosphate pathways are positively regulated by the metabolic intermediate AICAR (5'-phosphoribosyl-5-amino-4-imidazole carboxamide). The transcription factor Pho2p is required for up-regulation of all AICAR-responsive genes. Accordingly, the binding of Pho2p to purine and phosphate pathway gene promoters is enhanced upon AICAR accumulation. In vitro, AICAR binds both Pho2p and Pho4p transcription factors and stimulates the interaction between Pho2p and either Bas1p or Pho4p in vivo. In contrast, SAICAR (succinyl-AICAR) only affects Pho2p-Bas1p interaction and specifically up-regulates purine regulon genes. Together, our data show that Bas1p and Pho4p compete for Pho2p binding, hence leading to the concerted regulation of cellular nucleotide synthesis and phosphate consumption.

Indexed as

Gene Expression RegulationAminoimidazole CarboxamideCell NucleusDNA-Binding ProteinsHomeodomain ProteinsHomeostasisPhosphatesPromoter Regions, GeneticProtein BindingProtein TransportPurinesRegulonRibonucleotidesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsAICA ribonucleotideAminoimidazole CarboxamideBAS1 protein, S cerevisiaeDNA-Binding ProteinsHomeodomain ProteinsPHO2 protein, S cerevisiaePHO4 protein, S cerevisiaePhosphatespurinePurinesRibonucleotidesSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID19528318
PMCPMC2701576

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.