Evidence map›Paper›PMID 19528065›Full record

ArticleNucleic acids research2009

A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL.

Debashree Basu, Garima Khare, Shashi Singh, Anil Tyagi, Sanjeev Khosla, Shekhar C Mande

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
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  8. TheMicroorganisms · 2023
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  11. International journal of molecular sciences · 2021
    Article
  12. Frontiers in microbiology · 2020
    Article
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  14. Article
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Debashree BasuLaboratory of Structural Biology, Centre for DNA Fingerprinting and Diagnostics, Hyderabad 500001, India.
Garima Khare
Shashi Singh
Anil Tyagi
Sanjeev Khosla
Shekhar C Mande
Centre for DNA Fingerprinting and Diagnostics · IN

Funding

Wellcome Trust WT070006MA
6 · The paper itself

Abstract

The Mycobacterium tuberculosis genome sequence reveals remarkable absence of many nucleoid-associated proteins (NAPs), such as HNS, Hfq or DPS. In order to characterize the nucleoids of M. tuberculosis, we have attempted to identify NAPs, and report an interesting finding that a chaperonin-homolog, GroEL1, is nucleoid associated. We report that M. tuberculosis GroEL1 binds DNA with low specificity but high affinity, suggesting that it might have naturally evolved to bind DNA. We are able to demonstrate that GroEL1 can effectively function as a DNA-protecting agent against DNase I or hydroxyl-radicals. Moreover, Atomic Force Microscopic studies reveal that GroEL1 can condense a large DNA into a compact structure. We also provide in vivo evidences that include presence of GroEL1 in purified nucleoids, in vivo crosslinking followed by Southern hybridizations and immunofluorescence imaging in M. tuberculosis confirming that GroEL1: DNA interactions occur in natural biological settings. These findings therefore reveal that M. tuberculosis GroEL1 has evolved to be associated with nucleoids.

Indexed as

Bacterial ProteinsBinding SitesChaperonin 60Chromosomes, BacterialDNADNA-Binding ProteinsDNA, Single-StrandedMycobacterium tuberculosisNucleic Acid ConformationBacterial ProteinsChaperonin 60DNADNA-Binding ProteinsDNA, Single-Stranded

Identifiers

PMID19528065
PMCPMC2731897
OpenAlexW1987925755

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.