Evidence map›Paper›PMID 19525919›Full record

ArticleEMBO reports2009

Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex.

Juha P Himanen, Yehuda Goldgur, Hui Miao, Eugene Myshkin, Hong Guo, Matthias Buck, My Nguyen, Kanagalaghatta R Rajashankar, Bingcheng Wang, Dimitar B Nikolov

Abstract read
In one paragraph

Article in EMBO reports, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. EphA2 and Ephrin-A1 Utilize the Same Interface for BothbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Targeting the EphA2 pathway: could it be the way for bone sarcomas?Cell communication and signaling : CCS · 2024
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. World journal of gastrointestinal oncology · 2022
    Review
  15. Review
  16. Article
  17. EphA2 signaling within integrin adhesions regulates fibrillar adhesion elongation and fibronectin deposition.Matrix biology : journal of the International Society for Matrix Biology · 2021
    Article
  18. Article
  19. Article
  20. The EphB6 Receptor: Kinase-Dead but Very Much Alive.International journal of molecular sciences · 2021
    Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Juha P HimanenStructural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10021, USA.
Yehuda Goldgur
Hui Miao
Eugene Myshkin
Hong Guo
Matthias Buck
My Nguyen
Kanagalaghatta R Rajashankar
Bingcheng Wang
Dimitar B Nikolov

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
STRUCTURAL STUDY OF EPH RECEPTORS AND EPHRINSR01NS038486 · NINDS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI NIKOLOV, DIMITAR B · 1999 to 2018
$5.9M
EphA2 Agonists as Novel Inhibitors of Tumor ProgressionR01CA092259 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI WANG, BINGCHENG · 2002 to 2007
$1.4M
Eph Kinase Signaling In Renal Epithelial CellsR01DK077876 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI WANG, BINGCHENG · 2008 to 2011
$1.4M
Eph Kinase Signaling in Prostate CancerR01CA096533 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI WANG, BINGCHENG · 2001 to 2004
$954k
Expression and structural study of Eph receptor kin(RMI)R21GM075886 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI HIMANEN, JUHA P · 2005 to 2006
$474k
NCI NIH HHS CA92259NCI NIH HHS CA96533NCI NIH HHS R01 CA092259NCI NIH HHS R01 CA096533NCRR NIH HHS P41 RR015301NCRR NIH HHS RR-15301NIDDK NIH HHS DK077876NIDDK NIH HHS R01 DK077876NIGMS NIH HHS GM75886NIGMS NIH HHS R21 GM075886NINDS NIH HHS NS38486NINDS NIH HHS R01 NS038486
6 · The paper itself

Abstract

Ephrin (Eph) receptor tyrosine kinases fall into two subclasses (A and B) according to preferences for their ephrin ligands. All published structural studies of Eph receptor/ephrin complexes involve B-class receptors. Here, we present the crystal structures of an A-class complex between EphA2 and ephrin-A1 and of unbound EphA2. Although these structures are similar overall to their B-class counterparts, they reveal important differences that define subclass specificity. The structures suggest that the A-class Eph receptor/ephrin interactions involve smaller rearrangements in the interacting partners, better described by a 'lock-and-key'-type binding mechanism, in contrast to the 'induced fit' mechanism defining the B-class molecules. This model is supported by structure-based mutagenesis and by differential requirements for ligand oligomerization by the two subclasses in cell-based Eph receptor activation assays. Finally, the structure of the unligated receptor reveals a homodimer assembly that might represent EphA2-specific homotypic cell adhesion interactions.

Indexed as

Amino Acid SequenceCell LineCrystallography, X-RayDrug DesignEphrin-A1Ephrin-A2HumansLigandsModels, MolecularMolecular Sequence DataProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiaryReceptors, Eph FamilySequence AlignmentStatic ElectricityEphrin-A1Ephrin-A2LigandsReceptors, Eph Family

Identifiers

PMID19525919
PMCPMC2727437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.