Evidence map›Paper›PMID 19525417›Full record

ArticleEukaryotic cell2009

Cooperative regulation of ADE3 transcription by Gcn4p and Bas1p in Saccharomyces cerevisiae.

Yoo Jin Joo, Jung-Ae Kim, Joung Hee Baek, Ki Moon Seong, Kyung-Duk Han, Jae Mahn Song, Jin Young Choi, Joon Kim

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Gene coexpression measures in large heterogeneous samples using count statistics.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yoo Jin JooKorea University, Seoul, Korea.
Jung-Ae Kim
Joung Hee Baek
Ki Moon Seong
Kyung-Duk Han
Jae Mahn Song
Jin Young Choi
Joon Kim
Korea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The one-carbon response regulon is essential for the biosynthesis of nucleic acids as well as several amino acids. The ADE3 gene is known to encode a crucial one-carbon regulon enzyme, tetrahydrofolate synthase, which is involved in the biosynthesis of purine and the amino acids methionine and glycine. Therefore, the mechanism through which ADE3 transcription is regulated appears to be critical for the cross-talk among these metabolic pathways. Even so, the direct involvement of ADE3 transcription through gene-specific transcription factors has not been shown clearly. In this study, the promoter structure of the ADE3 gene was investigated in detail, and a genuine Gcn4p responsive element (GCRE) was confirmed among three putative GCRE elements in vivo and in vitro. Through gene deletion studies of Gcn4p and Bas1p, it was established that both factors are involved in the transcriptional regulation of the ADE3 gene. Direct binding to this GCRE and the occupancy of the ADE3 promoter by these factors were also confirmed. Taking these results together, we concluded that Gcn4p is responsible for the basal and inducible expression of the ADE3 gene, while Bas1p is required for its basal expression.

Indexed as

Gene Expression Regulation, FungalTranscription, GeneticAmino Acid SequenceAminohydrolasesBasic-Leucine Zipper Transcription FactorsFormate-Tetrahydrofolate LigaseMethylenetetrahydrofolate Dehydrogenase (NADP)Molecular Sequence DataMultienzyme ComplexesProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsAminohydrolasesBAS1 protein, S cerevisiaeBasic-Leucine Zipper Transcription FactorsFormate-Tetrahydrofolate Ligaseformyl-methenyl-methylenetetrahydrofolate synthetaseGCN4 protein, S cerevisiaeMethylenetetrahydrofolate Dehydrogenase (NADP)Multienzyme ComplexesSaccharomyces cerevisiae ProteinsTrans-Activators

Identifiers

PMID19525417
PMCPMC2725562
OpenAlexW2150411481

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.