Evidence map›Paper›PMID 19523900›Full record

ArticleStructure (London, England : 1993)2009

A symmetrical tetramer for S. aureus pyruvate carboxylase in complex with coenzyme A.

Linda P C Yu, Song Xiang, Gorka Lasso, David Gil, Mikel Valle, Liang Tong

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 64 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Linda P C YuDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Song Xiang
Gorka Lasso
David Gil
Mikel Valle
Liang Tong
CIC bioGUNE · ESColumbia University · US

Funding

Structural biology of enzymes in fatty acid metabolismR01DK067238 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2004 to 2012
$2.6M
NIDDK NIH HHS DK067238NIDDK NIH HHS R01 DK067238
6 · The paper itself

Abstract

Pyruvate carboxylase (PC) is a conserved metabolic enzyme with important cellular functions. We report crystallographic and cryo-electron microscopy (EM) studies of Staphylococcus aureus PC (SaPC) in complex with acetyl-CoA, an allosteric activator, and mutagenesis, biochemical, and structural studies of the biotin binding site of its carboxyltransferase (CT) domain. The disease-causing A610T mutation abolishes catalytic activity by blocking biotin binding to the CT active site, and Thr908 might play a catalytic role in the CT reaction. The crystal structure of SaPC in complex with CoA reveals a symmetrical tetramer, with one CoA molecule bound to each monomer, and cryo-EM studies confirm the symmetrical nature of the tetramer. These observations are in sharp contrast to the highly asymmetrical tetramer of Rhizobium etli PC in complex with ethyl-CoA. Our structural information suggests that acetyl-CoA promotes a conformation for the dimer of the biotin carboxylase domain of PC that might be catalytically more competent.

Indexed as

Acetyl Coenzyme AAllosteric RegulationAmino Acid SequenceBinding SitesBiotinCarbon-Nitrogen LigasesCatalysisCryoelectron MicroscopyCrystallizationCrystallography, X-RayDimerizationEnzyme ActivationModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedProtein BindingAcetyl Coenzyme ABiotinbiotin carboxylaseCarbon-Nitrogen LigasesPyruvate Carboxylase

Identifiers

PMID19523900
PMCPMC2731552
OpenAlexW1966261014

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.