ArticleBMC genomics2009
Gene expression profiling in peanut using high density oligonucleotide microarrays.
Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 58 citations in OpenAlex.
- The genusFrontiers in plant science · 2023Review
- Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut.Journal of fungi (Basel, Switzerland) · 2021Article
- A proteomic analysis of peanut seed at different stages of underground development to understand the changes of seed proteins.PloS one · 2020Article
- Article
- Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization.Scientific reports · 2017Article
- An integrative overview of the molecular and physiological responses of sugarcane under drought conditions.Plant molecular biology · 2017Article
- Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.).Plant biotechnology journal · 2016Article
- Genomic Tools in Groundnut Breeding Program: Status and Perspectives.Frontiers in plant science · 2016Review
- Responses ofFrontiers in microbiology · 2016Article
- Article
- Expression Comparison of Oil Biosynthesis Genes in Oil Palm Mesocarp Tissue Using Custom Array.Microarrays (Basel, Switzerland) · 2014Article
- Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut.Plant molecular biology · 2014Article
- Article
- De novo assembly of the peanut (Arachis hypogaea L.) seed transcriptome revealed candidate unigenes for oil accumulation pathways.PloS one · 2013Article
- Expressed sequence tags in cultivated peanut (Arachis hypogaea): discovery of genes in seed development and response to Ralstonia solanacearum challenge.Journal of plant research · 2012Article
- Global transcriptome analysis of two wild relatives of peanut under drought and fungi infection.BMC genomics · 2012Article
- Peanut (Arachis hypogaea) Expressed Sequence Tag Project: Progress and Application.Comparative and functional genomics · 2012Article
- A protocol for extraction of high-quality RNA and DNA from peanut plant tissues.Molecular biotechnology · 2011Article
- Article
Corrections and comments
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Authors and funding
8 authors at 6 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundTranscriptome expression analysis in peanut to date has been limited to a relatively small set of genes and only recently has a significant number of ESTs been released into the public domain. Utilization of these ESTs for oligonucleotide microarrays provides a means to investigate large-scale transcript responses to a variety of developmental and environmental signals, ultimately improving our understanding of plant biology.
resultsWe have developed a high-density oligonucleotide microarray for peanut using 49,205 publicly available ESTs and tested the utility of this array for expression profiling in a variety of peanut tissues. To identify putatively tissue-specific genes and demonstrate the utility of this array for expression profiling in a variety of peanut tissues, we compared transcript levels in pod, peg, leaf, stem, and root tissues. Results from this experiment showed 108 putatively pod-specific/abundant genes, as well as transcripts whose expression was low or undetected in pod compared to peg, leaf, stem, or root. The transcripts significantly over-represented in pod include genes responsible for seed storage proteins and desiccation (e.g., late-embryogenesis abundant proteins, aquaporins, legumin B), oil production, and cellular defense. Additionally, almost half of the pod-abundant genes represent unknown genes allowing for the possibility of associating putative function to these previously uncharacterized genes.
conclusionThe peanut oligonucleotide array represents the majority of publicly available peanut ESTs and can be used as a tool for expression profiling studies in diverse tissues.
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