Evidence map›Paper›PMID 19518133›Full record

ArticleBiochemistry2009

Delineating the conformational elements responsible for Cu(2+)-induced oligomerization of beta-2 microglobulin.

Dorottya V Blaho, Andrew D Miranker

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Structure of an early native-like intermediate of β2-microglobulin amyloidogenesis.Protein science : a publication of the Protein Society · 2013
    Article
  7. Review
  8. Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Dorottya V BlahoDepartment of Molecular Biophysics and Biochemistry Yale University, 260 Whitney Avenue, New Haven, Connecticut 06520-8114, USA.
Andrew D Miranker
Whitney Museum of American Art · USYale University · US

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
MOLECULAR BASIS OF FIBRIL FORMATION IN ISLET AMYLOIDR01DK054899 · NIDDK · YALE UNIVERSITY · PI MIRANKER, ANDREW D. · 1999 to 2007
$1.9M
Fibrillogenesis pathways in diabetes and renal diseasesR56DK054899 · NIDDK · YALE UNIVERSITY · PI MIRANKER, ANDREW D. · 2008 to 2008
$136k
NIDDK NIH HHS DK54899NIDDK NIH HHS R01 DK054899NIDDK NIH HHS R56 DK054899NIGMS NIH HHS T32 GM007223
6 · The paper itself

Abstract

Beta-2 microglobulin (beta2m) is a small globular protein implicated in amyloid fiber formation in renal patients on long-term hemodialysis therapy. In vitro, under physiological conditions, beta2m is not aggregation prone. However, in the presence of stoichiometric Cu(2+), beta2m readily self-associates ultimately leading to heterogeneously sized aggregates. As this process occurs under near physiological solution conditions where the fold is >or=20 kJ/mol stabilized over the unfolded state, local conformational rearrangements are critical to understanding the oligomerization of beta2m. The isomerization of a conserved cis proline at residue 32 is a recognized step in this process that can be initiated by Cu(2+) binding. To better understand the structural basis of metal-induced oligomerization of beta2m, we set out to determine the role of individual imidazole side chains in mediating metal binding affinity, native state stability, and oligomerization in the framework of P32A beta2m. We find that P32A in the presence of Cu(2+) forms a tetramer in an apparently cooperative manner. One interface of this tetramer appears to reside along an edge strand as H51 is a key residue in mediating oligomerization. Furthermore, H31 is the main Cu(2+) binding residue in P32A and has an important role in stabilizing the protein in its holo form. Importantly, Cu(2+) binding affinity in P32A is much greater than in WT. Here, we show that this strong binding affinity need not be directly coupled to oligomerization. We interpret our results in terms of the known structures of beta2m(apo) and a reversible hexameric state of beta2m(holo).

Indexed as

Amino Acid Substitutionbeta 2-MicroglobulinCopperHumansKineticsModels, MolecularMutant ProteinsProtein DenaturationProtein MultimerizationProtein StabilityProtein Structure, SecondaryUreabeta 2-MicroglobulinCopperMutant ProteinsUrea

Identifiers

PMID19518133
PMCPMC3342574
OpenAlexW2106678103

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.