Evidence map›Paper›PMID 19515263›Full record

ArticleBMC cancer2009

Fast simultaneous detection of K-RAS mutations in colorectal cancer.

Ya-Sian Chang, Kun-Tu Yeh, Tien-Jye Chang, Connie Chai, Hsiu-Chin Lu, Nicholas C Hsu, Jan-Gowth Chang

Abstract read
In one paragraph

Article in BMC cancer, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Experimental hematology & oncology · 2019
    Article
  4. Article
  5. Colorectal Cancer Screening: A Comprehensive Review to Recent Non-Invasive Methods.International journal of hematology-oncology and stem cell research · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ya-Sian ChangDepartment of Laboratory Medicine, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan. 970494@ms.kmuh.org.tw
Kun-Tu Yeh
Tien-Jye Chang
Connie Chai
Hsiu-Chin Lu
Nicholas C Hsu
Jan-Gowth Chang

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRAS genes acquire the most common somatic gain-of-function mutations in human cancer, and almost all of these mutations are located at codons 12, 13, 61, and 146.

methodsWe present a method for detecting these K-RAS hotspot mutations in 228 cases of colorectal cancer. The protocol is based on the multiplex amplification of exons 2, 3 and 4 in a single tube, followed by primer extension of the PCR products using various sizes of primers to detect base changes at codons 12, 13, 61 and 146. We compared the clinicopathological data of colorectal cancer patients with the K-RAS mutation status.

resultsK-RAS mutation occurred in 36% (83/228) of our colorectal cancer cases. Univariate analysis revealed a significant association between K-RAS mutation at codon 12 of exon 2 and poor 5-year survival (p = 0.023) and lymph node involvement (p = 0.048). Also, K-RAS mutation at codon 13 of exon 2 correlates with the size of the tumor (p = 0.03). Multivariate analysis adjusted for tumor size, histologic grade, and lymph node metastasis also indicated K-RAS mutations at codon 12 and 13 of exon 2 correlate significantly with overall survival (p = 0.002 and 0.025). No association was observed between codon 61 and 146 and clinicopathological features.

conclusionWe demonstrated a simple and fast way to identify K-RAS mutation.

Indexed as

Genes, rasPoint MutationCodonColorectal NeoplasmsDNA Mutational AnalysisHumansLymphatic MetastasisNeoplasm StagingPolymerase Chain ReactionSensitivity and SpecificityCodon

Identifiers

PMID19515263
PMCPMC2702390

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.