Evidence map›Paper›PMID 19509331›Full record

ArticleThe Plant cell2009

Crystal structure of the complex between Pseudomonas effector AvrPtoB and the tomato Pto kinase reveals both a shared and a unique interface compared with AvrPto-Pto.

Jing Dong, Fangming Xiao, Fenxia Fan, Lichuan Gu, Huaixing Cang, Gregory B Martin, Jijie Chai

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Bioinformatics Analysis of the TomatoPlants (Basel, Switzerland) · 2025
    Article
  3. Pattern Recognition Receptors in Plant Immunity.Advances in experimental medicine and biology · 2025
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. A molecular roadmap to the plant immune system.The Journal of biological chemistry · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Fine-mapping of a major QTL controlling angular leaf spot resistance in common bean (Phaseolus vulgaris L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Jing DongInstitute of Biophysics, Chinese Academy of Sciences, Beijing 100875, China.
Fangming Xiao
Fenxia Fan
Lichuan Gu
Huaixing Cang
Gregory B Martin
Jijie Chai
Ithaca College · USNational Institute of Biological Sciences, Beijing · CNChinese Academy of Sciences · CNInstitute of Biophysics · CNShandong University · CN

Funding

Role of bacterial virulence proteins in plant cell deathR01GM078021 · NIGMS · BOYCE THOMPSON INST FOR PLANT RESEARCH · PI MARTIN, GREGORY B · 2006 to 2014
$1.8M
NIGMS NIH HHS R01 GM078021NIGMS NIH HHS R01GM078021
6 · The paper itself

Abstract

Resistance to bacterial speck disease in tomato (Solanum lycopersicum) is activated upon recognition by the host Pto kinase of either one of two sequence-unrelated effector proteins, AvrPto or AvrPtoB, from Pseudomonas syringae pv tomato (Pst). Pto induces Pst immunity by acting in concert with the Prf protein. The recently reported structure of the AvrPto-Pto complex revealed that interaction of AvrPto with Pto appears to relieve an inhibitory effect of Pto, allowing Pto to activate Prf. Here, we present the crystal structure of the Pto binding domain of AvrPtoB (residues 121 to 205) at a resolution of 1.9A and of the AvrPtoB(121-205)-Pto complex at a resolution of 3.3 A. AvrPtoB(121-205) exhibits a tertiary fold that is completely different from that of AvrPto, and its conformation remains largely unchanged upon binding to Pto. In common with AvrPto-Pto, the AvrPtoB-Pto complex relies on two interfaces. One of these interfaces is similar in both complexes, although the primary amino acid sequences from the two effector proteins are very different. Amino acid substitutions in Pto at the other interface disrupt the interaction of AvrPtoB-Pto but not that of AvrPto-Pto. Interestingly, substitutions in Pto affecting this unique interface also cause Pto to induce Prf-dependent host cell death independently of either effector protein.

Indexed as

Amino Acid SequenceBacterial ProteinsCrystallography, X-RayModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedMutationPlant ProteinsProtein Interaction MappingProtein Serine-Threonine KinasesProtein Structure, TertiaryPseudomonas syringaeSequence AlignmentSolanum lycopersicumVirulence FactorsavrPto protein, Pseudomonas syringaeBacterial ProteinsPlant ProteinsProtein Serine-Threonine KinasesPto protein, LycopersiconVirulence Factors

Identifiers

PMID19509331
PMCPMC2714939
OpenAlexW2161496396

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.