Evidence map›Paper›PMID 19506577›Full record

ReviewNature reviews. Genetics2009

Transcription factories: gene expression in unions?

Heidi Sutherland, Wendy A Bickmore

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 218 papers.

0numbers the graph read from it
0cells of the map it votes in
218citing papers in PubMed
17.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

218 citing papers in PubMed, 388 citations in OpenAlex.

  1. Review
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  14. HiChIP for Plant Tissues.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  15. Review
  16. Ambiguities in neural-network-based hyperedge prediction.Journal of applied and computational topology · 2024
    Article
  17. Article
  18. Article
  19. Transcription Factor Condensates Mediate Clustering ofbioRxiv : the preprint server for biology · 2024
    Article
  20. Article

158 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Heidi SutherlandMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Crewe Road, Edinburgh EH4 2XU, UK.
Wendy A Bickmore
MRC Institute of Genetics and Molecular Medicine · GB

Funding

Medical Research Council MC_U127527202
6 · The paper itself

Abstract

Transcription is a fundamental step in gene expression, yet it remains poorly understood at a cellular level. Visualization of transcription sites and active genes has led to the suggestion that transcription occurs at discrete sites in the nucleus, termed transcription factories, where multiple active RNA polymerases are concentrated and anchored to a nuclear substructure. However, this concept is not universally accepted. This Review discusses the experimental evidence in support of the transcription factory model and the evidence that argues against such a spatially structured view of transcription. The transcription factory model has implications for the regulation of transcription initiation and elongation, for the organization of genes in the genome, for the co-regulation of genes and for genome instability.

Indexed as

Models, BiologicalAnimalsCell NucleusDNA-Directed RNA PolymerasesGenomeGenomic InstabilityHumansTranscription, GeneticDNA-Directed RNA Polymerases

Identifiers

PMID19506577
OpenAlexW1986974894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.