Evidence map›Paper›PMID 19506015›Full record

ArticleInfection and immunity2009

Comparative analysis of the locus of enterocyte effacement and its flanking regions.

Daniel Müller, Inga Benz, Ariane Liebchen, Inka Gallitz, Helge Karch, M Alexander Schmidt

Abstract readComparative Study
In one paragraph

Article in Infection and immunity, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Is Shiga Toxin-ProducingMicroorganisms · 2020
    Article
  7. Review
  8. Enterobacteria and host resistance to infection.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Review
  9. Diarrheagenic Escherichia coli.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2016
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Enterohemorrhagic E. coli (EHEC) pathogenesis.Frontiers in cellular and infection microbiology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Daniel MüllerInstitut für Infektiologie, Zentrum für Molekularbiologie der Entzündung, Münster, Germany.
Inga Benz
Ariane Liebchen
Inka Gallitz
Helge Karch
M Alexander Schmidt

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The attaching-and-effacing (A/E) phenotype mediated by factors derived from the locus of enterocyte effacement (LEE) is a hallmark of clinically important intestinal pathotypes of Escherichia coli, including enteropathogenic (EPEC), atypical EPEC (ATEC), and enterohemorrhagic E. coli strains. Epidemiological studies indicate that the frequency of diarrhea outbreaks caused by ATEC is increasing. Hence, it is of major importance to further characterize putative factors contributing to the pathogenicity of these strains and to gain additional insight into the plasticity and evolutionary aspects of this emerging pathotype. Here, we analyzed the two clinical ATEC isolates B6 (O26:K60) and 9812 (O128:H2) and compared the genetic organizations, flanking regions, and chromosomal insertion loci of their LEE with those of the LEE of other A/E pathogens. Our analysis shows that the core LEE is largely conserved-particularly among genes coding for the type 3 secretion system-whereas genes encoding effector proteins display a higher variability. Chromosomal insertion loci appear to be restricted to selC, pheU, and pheV. In contrast, striking differences were found between the 5'- and 3'-associated flanking regions reflecting the different histories of the various strains and also possibly indicating different lines in evolution.

Indexed as

Conserved SequenceDNA, BacterialEnterohemorrhagic Escherichia coliEnteropathogenic Escherichia coliEscherichia coli InfectionsEscherichia coli ProteinsEvolution, MolecularGenetic VariationHumansMolecular Sequence DataPhosphoproteinsPhylogenySequence Analysis, DNAVirulence FactorsDNA, BacterialEscherichia coli ProteinsLEE protein, E coliPhosphoproteinsVirulence Factors

Identifiers

PMID19506015
PMCPMC2715695

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.