Evidence map›Paper›PMID 19505540›Full record

ArticleGene2009

Fast, adaptive evolution at a bacterial host-resistance locus: the PFam54 gene array in Borrelia burgdorferi.

Ewa Wywial, James Haven, Sherwood R Casjens, Yozen A Hernandez, Shaneen Singh, Emmanuel F Mongodin, Claire M Fraser-Liggett, Benjamin J Luft, Steven E Schutzer, Wei-Gang Qiu

Abstract read
In one paragraph

Article in Gene, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Borrelia surface proteins: new horizons in Lyme disease diagnosis.Applied microbiology and biotechnology · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Microbial adaptive evolution.Journal of industrial microbiology & biotechnology · 2022
    Review
  12. Article
  13. Article
  14. Lyme Disease in Humans.Current issues in molecular biology · 2021
    Article
  15. Review
  16. Evolutionary ecology of Lyme Borrelia.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  17. Article
  18. Review
  19. The RpoS Gatekeeper inFrontiers in microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ewa WywialDepartment of Biology, The Graduate Center of the City University of New York, 365 Fifth Avenue, New York, NY 10016, USA.
James Haven
Sherwood R Casjens
Yozen A Hernandez
Shaneen Singh
Emmanuel F Mongodin
Claire M Fraser-Liggett
Benjamin J Luft
Steven E Schutzer
Wei-Gang Qiu

Funding

WILD TYPE &MUTANT P53 INTERACTIONS WITH HIV LTR DNAG12RR003037 · NCRR · HUNTER COLLEGE · PI DOTTIN, ROBERT P · 1985 to 2011
$27.6M
RISE Program Hunter College Option IIIR25GM060665 · NIGMS · HUNTER COLLEGE · PI ORTIZ, BENJAMIN D.,, SERRANO, PETER A · 2000 to 2022
$22.8M
Rapid Detection and Identification of Zoonotic PathogensU01AI056480 · NIAID · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI DUNN, JOHN J · 2003 to 2007
$4.2M
Comparative Genomics of Lyme Disease SpirochetesR01AI049003 · NIAID · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2002 to 2004
$1.4M
ASSAY TO DETECT ACUTE ACTIVE LYME DISEASER44AI047553 · NIAID · BIOSCIENCE DEVELOPMENT, INC. · PI SCHUTZER, STEVEN E · 2000 to 2005
$897k
Comparative Genomics of Major Clonal Groups of a Lyme Disease PathogenSC3GM083722 · NIGMS · HUNTER COLLEGE · PI QIU, WEIGANG · 2008 to 2011
$554k
MBRS PROGRAM AT HUNTER COLLEGER25GM056945 · NIGMS · HUNTER COLLEGE · PI LUINE, VICTORIA N · 1998 to 2000
$65k
NCRR NIH HHS G12 RR003037NCRR NIH HHS RR03037NIAID NIH HHS AI056480NIAID NIH HHS AI47553NIAID NIH HHS AI49003NIAID NIH HHS R01 AI049003NIAID NIH HHS R44 AI047553NIAID NIH HHS U01 AI056480NIGMS NIH HHS GM083722NIGMS NIH HHS GM60665NIGMS NIH HHS R25 GM056945NIGMS NIH HHS R25 GM060665NIGMS NIH HHS SC3 GM083722
6 · The paper itself

Abstract

Microbial pathogens have evolved sophisticated mechanisms for evasion of host innate and adaptive immunities. PFam54 is the largest paralogous gene family in the genomes of Borrelia burgdorferi, the Lyme disease bacterium. One member of PFam54, the complement-regulator acquiring surface proteins 1 (BbCrasp-1), is able to abort the alternative pathway of complement activation via binding human complement-regulator factor H (FH). The gene coding for BbCRASP-1 exists in a tandem array of PFam54 genes in the B. burgdorferi genome, a result apparently of repeated gene duplications. To help elucidate the functions of the large number of PFam54 genes, we performed phylogenomic and structural analyses of the PFam54 gene array from ten B. burgdorferi genomes. Analyses based on gene tree, genome synteny, and structural models revealed rapid adaptive evolution of this array through gene duplication, gene loss, and functional diversification. Individual PFam54 genes, however, do not show high intra-population sequence polymorphisms as genes providing evasion from adaptive immunity generally do. PFam54 members able to bind human FH are not monophyletic, suggesting that human FH affinity, however strong, is an incidental rather than main function of these PFam54 proteins. The large number of PFam54 genes existing in any single B. burgdorferi genome may target different innate-immunity proteins of a single host species or the same immune protein of a variety of host species. Genetic variability of the PFam54 gene array suggests that universally present PFam54 lineages such as BBA64, BBA65, BBA66, and BBA73 may be better candidates for the development of broad-spectrum vaccines or drugs than strain-restricted lineages such as BbCRASP-1.

Indexed as

Evolution, MolecularMultigene FamilyAdaptation, BiologicalBacterial InfectionsBacterial ProteinsBase SequenceBinding SitesBorrelia burgdorferiComplement C3b Inactivator ProteinsComplement Factor HGenes, BacterialGenetic VariationHost-Pathogen InteractionsImmunity, InnateLyme DiseaseMembrane ProteinsBacterial ProteinsCFHR1 protein, humanComplement C3b Inactivator ProteinsComplement Factor Hcomplement regulator-acquiring surface proteins, Borrelia burgdorferiMembrane Proteins

Identifiers

PMID19505540
PMCPMC2743244

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.