Evidence map›Paper›PMID 19504740›Full record

ArticleMolecular microbiology2009

Hypermethylated cap 4 maximizes Trypanosoma brucei translation.

Jesse R Zamudio, Bidyottam Mittra, David A Campbell, Nancy R Sturm

Abstract read
In one paragraph

Article in Molecular microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Review
  2. Article
  3. 2'-RNA (New York, N.Y.) · 2024
    Review
  4. Review
  5. Article
  6. Practical Synthesis of Cap-4 RNA.Chembiochem : a European journal of chemical biology · 2020
    Article
  7. Article
  8. Article
  9. Review
  10. Regulation and function of CMTR1-dependent mRNA cap methylation.Wiley interdisciplinary reviews. RNA · 2017
    Review
  11. Review
  12. The eIF3 complex ofRNA (New York, N.Y.) · 2017
    Article
  13. Review
  14. Synthetic mRNA capping.Beilstein journal of organic chemistry · 2017
    Review
  15. Article
  16. The messenger RNA decapping and recapping pathway in Trypanosoma.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jesse R ZamudioDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, CA 90095-1489, USA.
Bidyottam Mittra
David A Campbell
Nancy R Sturm

Funding

Kinetoplastid SL RNA BiogenesisR01AI056034 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CAMPBELL, DAVID A · 2004 to 2013
$3.7M
PREDOCTORAL TRAINING PROGRAM IN GENETIC MECHANISMS AT UCT32GM007104 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GOBER, JAMES W · 1985 to 2011
$3.6M
NIAID NIH HHS AI056034NIAID NIH HHS R01 AI056034NIGMS NIH HHS GM07104NIGMS NIH HHS T32 GM007104
6 · The paper itself

Abstract

Through trans-splicing of a 39-nt spliced leader (SL) onto each protein-coding transcript, mature kinetoplastid mRNA acquire a hypermethylated 5'-cap structure, but its function has been unclear. Gene deletions for three Trypanosoma brucei cap 2'-O-ribose methyltransferases, TbMTr1, TbMTr2 and TbMTr3, reveal distinct roles for four 2'-O-methylated nucleotides. Elimination of individual gene pairs yields viable cells; however, attempts at double knock-outs resulted in the generation of a TbMTr2-/-/TbMTr3-/- cell line only. Absence of both kinetoplastid-specific enzymes in TbMTr2-/-/TbMTr3-/- lines yielded substrate SL RNA and mRNA with cap 1. TbMTr1-/- translation is comparable with wildtype, while cap 3 and cap 4 loss reduced translation rates, exacerbated by the additional loss of cap 2. TbMTr1-/- and TbMTr2-/-/TbMTr3-/- lines grow to lower densities under normal culture conditions relative to wildtype cells, with growth rate differences apparent under low serum conditions. Cell viability may not tolerate delays at both the nucleolar Sm-independent and nucleoplasmic Sm-dependent stages of SL RNA maturation combined with reduced rates of translation. A minimal level of mRNA cap ribose methylation is essential for trypanosome viability, providing the first functional role for the cap 4.

Indexed as

Protein BiosynthesisAnimalsGene Knockout TechniquesMethylationMethyltransferasesProtozoan ProteinsRNA CapsRNA, ProtozoanRNA, Spliced LeaderTrypanosoma brucei bruceiMethyltransferasesProtozoan ProteinsRNA CapsRNA, ProtozoanRNA, Spliced Leader

Identifiers

PMID19504740
PMCPMC2859698

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.