ArticlePloS one2009
Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification.
Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers, 1 of them a synthesis that pooled it.
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Who cites it
85 citing papers in PubMed, 1 synthesis or guideline pooled it, 179 citations in OpenAlex.
- Analysis of the arabidopsis REM gene family predicts functions during flower development.Annals of botany · 2014Pooled it
- Comprehensive Analysis of theBiology · 2026Article
- Genome-wide analysis of the B3 family in apple (Malus domestica Borkh.) and functional identification of MdREM19 involvement in salt stress.BMC genomics · 2026Article
- Transcription factors instruct DNA methylation patterns in plant reproductive tissues.Nature cell biology · 2025Article
- NGATHA carpel development genes evolved in the common ancestor of seed plants.The Plant journal : for cell and molecular biology · 2025Article
- The characterization of the LEAFY COTYLEDON 2 activation domains reveals its conserved dual mode of action in flowering plants.The Plant journal : for cell and molecular biology · 2025Article
- Developmental rewiring of the NGAL/CUC/KLU network associated with pleiotropic roles of NGAL genes.The Plant journal : for cell and molecular biology · 2025Article
- Melatonin suppresses ethylene biosynthesis by inhibiting transcription factor MdREM10 during apple fruit ripening.Horticulture research · 2025Article
- Article
- Evolutionary origins and functional diversification of Auxin Response Factors.Nature communications · 2024Article
- Characterization and expression analysis of the B3 gene family during seed development in Akebia trifoliata.BMC genomics · 2024Article
- Genetic factors acting prior to dormancy in sour cherry influence bloom time the following spring.Journal of experimental botany · 2024Article
- Transcriptomic Analysis of Self-Incompatibility in Alfalfa.Plants (Basel, Switzerland) · 2024Article
- Identification and expression analyses of B3 genes reveal lineage-specific evolution and potential roles of REM genes in pepper.BMC plant biology · 2024Article
- Genome-wide identification of the B3 transcription factor family in pepper (Capsicum annuum) and expression patterns during fruit ripening.Scientific reports · 2024Article
- Molecular identification and functional characterization of a transcription factor GeRAV1 from Gelsemium elegans.BMC genomics · 2024Article
- Two transcription factors, AcREM14 and AcC3H1, enhance the resistance of kiwifruitHorticulture research · 2024Article
- Genome-Wide Identification and Expression Analysis Reveals the B3 Superfamily Involved in Embryogenesis and Hormone Responses inInternational journal of molecular sciences · 2023Article
- Identification of the AP2/ERF transcription factor family of3 Biotech · 2023Article
- Cis-regulatory elements and transcription factors related to auxin signaling in the streptophyte algae Klebsormidium nitens.Scientific reports · 2023Article
25 more citing papers are in PubMed but not listed here.
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe B3 DNA binding domain includes five families: auxin response factor (ARF), abscisic acid-insensitive3 (ABI3), high level expression of sugar inducible (HSI), related to ABI3/VP1 (RAV) and reproductive meristem (REM). The release of the complete genomes of the angiosperm eudicots Arabidopsis thaliana and Populus trichocarpa, the monocot Orysa sativa, the bryophyte Physcomitrella patens,the green algae Chlamydomonas reinhardtii and Volvox carteri and the red algae Cyanidioschyzon melorae provided an exceptional opportunity to study the evolution of this superfamily. METHODOLOGY: In order to better understand the origin and the diversification of B3 domains in plants, we combined comparative phylogenetic analysis with exon/intron structure and duplication events. In addition, we investigated the conservation and divergence of the B3 domain during the origin and evolution of each family.
conclusionsOur data indicate that showed that the B3 containing genes have undergone extensive duplication events, and that the REM family B3 domain has a highly diverged DNA binding. Our results also indicate that the founding member of the B3 gene family is likely to be similar to the ABI3/HSI genes found in C. reinhardtii and V. carteri. Among the B3 families, ABI3, HSI, RAV and ARF are most structurally conserved, whereas the REM family has experienced a rapid divergence. These results are discussed in light of their functional and evolutionary roles in plant development.
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