Evidence map›Paper›PMID 19502446›Full record

ArticleApplied and environmental microbiology2009

USER friendly cloning coupled with chitin-based natural transformation enables rapid mutagenesis of Vibrio vulnificus.

Paul A Gulig, Matthew S Tucker, Patrick C Thiaville, Jennifer L Joseph, Roslyn N Brown

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 80 citations in OpenAlex.

  1. Review
  2. Regulators of natural competence in Vibrio parahaemolyticus.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Article
  3. Article
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  6. Article
  7. Article
  8. Identification ofFrontiers in microbiology · 2019
    Article
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  12. The Opportunistic PathogenFrontiers in microbiology · 2017
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Multiplex genome editing by natural transformation.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Paul A GuligDepartment of Molecular Genetics and Microbiology, University of Florida College of Medicine, Gainesville, 32610-0266, USA. gulig@ufl.edu
Matthew S Tucker
Patrick C Thiaville
Jennifer L Joseph
Roslyn N Brown
Florida College · USUniversity of Florida · US

Funding

Molecular Pathogenesis of Vibrio vulnificusR01AI056056 · NIAID · UNIVERSITY OF FLORIDA · PI GULIG, PAUL A · 2003 to 2007
$1.3M
Biodefense and Emerging Infectious Diseases (BEID)T32AI060527 · NIAID · UNIVERSITY OF FLORIDA · PI RENNE, ROLF F · 2005 to 2009
$357k
NIAID NIH HHS R01 AI056056NIAID NIH HHS T32 AI060527
6 · The paper itself

Abstract

Vibrio vulnificus is a bacterial contaminant of shellfish and causes highly lethal sepsis and destructive wound infections. A definitive identification of virulence factors using the molecular version of Koch's postulates has been hindered because of difficulties in performing molecular genetic analysis of this opportunistic pathogen. For example, conjugation is required to introduce plasmid DNA, and allelic exchange suicide vectors that rely on sucrose sensitivity for counterselection are not efficient. We therefore incorporated USER friendly cloning techniques into pCVD442-based allelic exchange suicide vectors and other expression vectors to enable the rapid and efficient capture of PCR amplicons. Upstream and downstream DNA sequences flanking genes targeted for deletion were cloned together in a single step. Based on results from Vibrio cholerae, we determined that V. vulnificus becomes naturally transformable with linear DNA during growth on chitin in the form of crab shells. By combining USER friendly cloning and chitin-based transformation, we rapidly and efficiently produced targeted deletions in V. vulnificus, bypassing the need for two-step, suicide vector-mediated allelic exchange. These methods were used to examine the roles of two flagellin loci (flaCDE and flaFBA), the motAB genes, and the cheY-3 gene in motility and to create deletions of rtxC, rtxA1, and fadR. Additionally, chitin-based transformation was useful in moving antibiotic resistance-labeled mutations between V. vulnificus strains by simply coculturing the strains on crab shells. The methods and genetic tools that we developed should be of general use to those performing molecular genetic analysis and manipulation of other gram-negative bacteria.

Indexed as

MutagenesisRecombination, GeneticChitinCloning, MolecularGene DeletionGenes, BacterialGenetic EngineeringMolecular BiologyTransformation, BacterialVibrio vulnificusVirulence FactorsChitinVirulence Factors

Identifiers

PMID19502446
PMCPMC2725515
OpenAlexW2149681189

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.