Evidence map›Paper›PMID 19502409›Full record

ArticleJournal of bacteriology2009

Replication initiator DnaA of Escherichia coli changes its assembly form on the replication origin during the cell cycle.

Shingo Nozaki, Hironori Niki, Tohru Ogawa

Abstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Relative Distribution of DnaA and DNA inInternational journal of molecular sciences · 2025
    Article
  4. IHF and Fis asInternational journal of molecular sciences · 2023
    Review
  5. Article
  6. The DnaA Tale.Frontiers in microbiology · 2018
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Helicase loading at chromosomal origins of replication.Cold Spring Harbor perspectives in biology · 2013
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shingo NozakiDivision of Biological Science, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya, Japan.
Hironori Niki
Tohru Ogawa

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DnaA is a replication initiator protein that is conserved among bacteria. It plays a central role in the initiation of DNA replication. In order to monitor its behavior in living Escherichia coli cells, a nonessential portion of the protein was replaced by a fluorescent protein. Such a strain grew normally, and flow cytometry data suggested that the chimeric protein has no substantial loss of the initiator activity. The initiator was distributed all over the nucleoid. Furthermore, a majority of the cells exhibited certain distinct foci that emitted bright fluorescence. These foci colocalized with the replication origin (oriC) region and were brightest during the period spanning the initiation event. In cells that had undergone the initiation, the foci were enriched in less intense ones. In addition, a significant portion of the oriC regions at this cell cycle stage had no colocalized DnaA-enhanced yellow fluorescent protein (EYFP) focus point. It was difficult to distinguish the initiator titration locus (datA) from the oriC region. However, involvement of datA in the initiation control was suggested from the observation that, in DeltadatA cells, DnaA-EYFP maximally colocalized with the oriC region earlier in the cell cycle than it did in wild-type cells and oriC concentration was increased.

Indexed as

Bacterial ProteinsBlotting, WesternCell CycleDNA-Binding ProteinsEscherichia coliLuminescent ProteinsMicroscopy, FluorescencePolymerase Chain ReactionReplication OriginBacterial ProteinsDnaA protein, BacteriaDNA-Binding ProteinsLuminescent Proteinsyellow fluorescent protein, Bacteria

Identifiers

PMID19502409
PMCPMC2715721

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.