Evidence map›Paper›PMID 19499346›Full record

ArticlePlant molecular biology2009

Cre-lox univector acceptor vectors for functional screening in protoplasts: analysis of Arabidopsis donor cDNAs encoding ABSCISIC ACID INSENSITIVE1-like protein phosphatases.

Fan Jia, Srinivas S L Gampala, Amandeep Mittal, Qingjun Luo, Christopher D Rock

Open access · greenAbstract read
In one paragraph

Article in Plant molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Fan JiaDepartment of Biological Sciences, Texas Tech University, Lubbock, TX 79409-3131, USA. fan.jia@ttu.edu
Srinivas S L Gampala
Amandeep Mittal
Qingjun Luo
Christopher D Rock
Texas Tech University · US

Funding

Computational analysis of causality between miRNAs and antisense transcriptionR21GM077245 · NIGMS · TEXAS TECH UNIVERSITY · PI ROCK, CHRISTOPHER DALE · 2007 to 2009
$519k
NIGMS NIH HHS GM077245NIGMS NIH HHS R21 GM077245
6 · The paper itself

Abstract

The 14,200 available full length Arabidopsis thaliana cDNAs in the universal plasmid system (UPS) donor vector pUNI51 should be applied broadly and efficiently to leverage a "functional map-space" of homologous plant genes. We have engineered Cre-lox UPS host acceptor vectors (pCR701- 705) with N-terminal epitope tags in frame with the loxH site and downstream from the maize Ubiquitin promoter for use in transient protoplast expression assays and particle bombardment transformation of monocots. As an example of the utility of these vectors, we recombined them with several Arabidopsis cDNAs encoding Ser/Thr protein phosphatase type 2C (PP2Cs) known from genetic studies or predicted by hierarchical clustering meta-analysis to be involved in ABA and stress responses. Our functional results in Zea mays mesophyll protoplasts on ABA-inducible expression effects on the Late Embryogenesis Abundant promoter ProEm:GUS reporter were consistent with predictions and resulted in identification of novel activities of some PP2Cs. Deployment of these vectors can facilitate functional genomics and proteomics and identification of novel gene activities.

Indexed as

Abscisic AcidArabidopsisArabidopsis ProteinsDNA, ComplementaryDNA, PlantGene Expression ProfilingGenetic VectorsPhosphoprotein PhosphatasesPhylogenyPlants, Genetically ModifiedProtein Phosphatase 2CProtoplastsTransformation, GeneticZea maysAbscisic AcidArabidopsis ProteinsDNA, ComplementaryDNA, PlantPhosphoprotein PhosphatasesProtein Phosphatase 2C

Identifiers

PMID19499346
PMCPMC2755202
OpenAlexW1984869139

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.