Evidence map›Paper›PMID 19497740›Full record

ArticleBioorganic & medicinal chemistry letters2009

Tra1 as a screening target for transcriptional activation domain discovery.

Chinmay Y Majmudar, Anne E Labut, Anna K Mapp

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chinmay Y MajmudarDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
Anne E Labut
Anna K Mapp
University of Michigan–Ann Arbor · US

Funding

Probing Transcriptional Activation at the Molecular Level - Equipment SupplementR01GM065330 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MAPP, ANNA K. · 2002 to 2019
$4.2M
NIGMS NIH HHS GM65330NIGMS NIH HHS R01 GM065330
6 · The paper itself

Abstract

There is tremendous interest in developing activator artificial transcription factors that functionally mimic endogenous transcriptional activators for use as mechanistic probes, as components of synthetic cell circuitry, and in transcription-targeted therapies. Here, we demonstrate that a phage display selection against the transcriptional activation domain binding motif of the coactivator Tra1(TRRAP) produces distinct sequences that function with similar binding modes and potency as natural activators. These findings set the stage for binding screens with small molecule libraries against TAD binding motifs to yield next-generation small molecule TADs.

Indexed as

Transcriptional ActivationAmino Acid SequenceBinding SitesHistone AcetyltransferasesLigandsMolecular Sequence DataPeptide LibraryProtein BindingProtein Structure, TertiarySaccharomyces cerevisiae ProteinsTrans-ActivatorsHistone AcetyltransferasesLigandsPeptide LibrarySaccharomyces cerevisiae ProteinsTRA1 protein, S cerevisiaeTrans-Activators

Identifiers

PMID19497740
PMCPMC4322765
OpenAlexW2031084703

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.