Evidence map›Paper›PMID 19497607›Full record

ArticleVirology2009

Laser capture microdissection of cervical human papillomavirus infections: copy number of the virus in cancerous and normal tissue and heterogeneous DNA methylation.

Mina Kalantari, Alejandro Garcia-Carranca, Claudia Dalia Morales-Vazquez, Rosemary Zuna, Delia Perez Montiel, Itzel E Calleja-Macias, Bo Johansson, Sonia Andersson, Hans-Ulrich Bernard

Open access · greenAbstract read
In one paragraph

Article in Virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
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  15. Stratification of HPV-induced cervical pathology using the virally encoded molecular marker E4 in combination with p16 or MCM.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2015
    Article
  16. Article
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  19. Expression of RUNX3 and β-catenin in the carcinogenesis of sporadic colorectal tubular adenoma.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Mina KalantariDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA.
Alejandro Garcia-Carranca
Claudia Dalia Morales-Vazquez
Rosemary Zuna
Delia Perez Montiel
Itzel E Calleja-Macias
Bo Johansson
Sonia Andersson
Hans-Ulrich Bernard
University of California, Irvine · USKarolinska University Hospital · SEUniversidad Nacional Autónoma de México · MXInstituto Nacional de Cancerología · MXUniversity of Oklahoma Health Sciences Center · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Christine Hui · 1994 to 2026
$57.9M
Control of Human Papillomavirus-16 TranscriptionR01CA091964 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI BERNARD, HANS-ULRICH ULRICH · 2002 to 2006
$1.6M
Medical Research CouncilNCI NIH HHS P30 CA062203NCI NIH HHS R01 CA091964NCI NIH HHS R01 CA-91964
6 · The paper itself

Abstract

Research on the pathogenicity of human papillomaviruses (HPVs) during cervical carcinogenesis often relies on the study of homogenized tissue or cultured cells. This approach does not detect molecular heterogeneities within the infected tissue. It is desirable to understand molecular properties in specific histological contexts. We asked whether laser capture microdissection (LCM) of archival cervical tumors in combination with real-time polymerase chain reaction and bisulfite sequencing permits (i) sensitive DNA diagnosis of small clusters of formalin-fixed cells, (ii) quantification of HPV DNA in neoplastic and normal cells, and (iii) analysis of HPV DNA methylation, a marker of tumor progression. We analyzed 26 tumors containing HPV-16 or 18. We prepared DNA from LCM dissected thin sections of 100 to 2000 cells, and analyzed aliquots corresponding to between nine and 70 cells. We detected nine to 630 HPV-16 genome copies and one to 111 HPV-18 genome copies per tumor cell, respectively. In 17 of the 26 samples, HPV DNA existed in histologically normal cells distant from the margins of the tumors, but at much lower concentrations than in the tumor, suggesting that HPVs can infect at low levels without pathogenic changes. Methylation of HPV DNA, a biomarker of integration of the virus into cellular DNA, could be measured only in few samples due to limited sensitivity, and indicated heterogeneous methylation patterns in small clusters of cancerous and normal cells. LCM is powerful to study molecular parameters of cervical HPV infections like copy number, latency and epigenetics.

Indexed as

DNA MethylationDNA, ViralFemaleHuman papillomavirus 16Human papillomavirus 18HumansMicrodissectionPapillomavirus InfectionsUterine Cervical NeoplasmsDNA, Viral

Identifiers

PMID19497607
PMCPMC2753400
OpenAlexW2001603782

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.