Evidence map›Paper›PMID 19496823›Full record

ArticleFEMS immunology and medical microbiology2009

Characterization of the major formamidopyrimidine-DNA glycosylase homolog in Mycobacterium tuberculosis and its linkage to variable tandem repeats.

Ingrid Olsen, Seetha V Balasingham, Tonje Davidsen, Ephrem Debebe, Einar A Rødland, Dick van Soolingen, Kristin Kremer, Ingrun Alseth, Tone Tønjum

Open access · hybridAbstract read
In one paragraph

Article in FEMS immunology and medical microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Inhibitors of DNA Glycosylases as Prospective Drugs.International journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Ingrid OlsenCentre for Molecular Biology and Neuroscience, Institute of Microbiology, University of Oslo, Oslo University Hospital (Rikshospitalet), Oslo, Norway.
Seetha V Balasingham
Tonje Davidsen
Ephrem Debebe
Einar A Rødland
Dick van Soolingen
Kristin Kremer
Ingrun Alseth
Tone Tønjum
Oslo University Hospital · NONational Institute for Public Health and the Environment · NLUniversity of Oslo · NONorwegian Computing Center · NONorwegian Veterinary Institute · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability to repair DNA damage is likely to play an important role in the survival of facultative intracellular parasites because they are exposed to high levels of reactive oxygen species and nitrogen intermediates inside phagocytes. Correcting oxidative damage in purines and pyrimidines is the primary function of the enzymes formamidopyrimidine (faPy)-DNA glycosylase (Fpg) and endonuclease VIII (Nei) of the base excision repair pathway, respectively. Four gene homologs, belonging to the fpg/nei family, have been identified in Mycobacterium tuberculosis H37Rv. The recombinant protein encoded by M. tuberculosis Rv2924c, termed Mtb-Fpg1, was overexpressed, purified and biochemically characterized. The enzyme removed faPy and 5-hydroxycytosine lesions, as well as 8-oxo-7,8-dihydroguanine (8oxoG) opposite to C, T and G. Mtb-Fpg1 thus exhibited substrate specificities typical for Fpg enzymes. Although Mtb-fpg1 showed nearly complete nucleotide sequence conservation in 32 M. tuberculosis isolates, the region upstream of Mtb-fpg1 in these strains contained tandem repeat motifs of variable length. A relationship between repeat length and Mtb-fpg1 expression level was demonstrated in M. tuberculosis strains, indicating that an increased length of the tandem repeats positively influenced the expression levels of Mtb-fpg1. This is the first example of such a tandem repeat region of variable length being linked to the expression level of a bacterial gene.

Indexed as

DNA RepairMinisatellite RepeatsBacterial ProteinsConserved SequenceDNA, BacterialDNA-Formamidopyrimidine GlycosylaseGene ExpressionGene Expression ProfilingHumansMycobacterium tuberculosisSequence HomologySubstrate SpecificityBacterial ProteinsDNA, BacterialDNA-Formamidopyrimidine Glycosylase

Identifiers

PMID19496823
PMCPMC2734929
OpenAlexW2051957867

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.