ArticleNucleic acids research2009
mGene.web: a web service for accurate computational gene finding.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
6 citing papers in PubMed.
- A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes.Genome biology · 2016Article
- Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine.Pharmaceutics · 2016Review
- WebAUGUSTUS--a web service for training AUGUSTUS and predicting genes in eukaryotes.Nucleic acids research · 2013Article
- Article
- rQuant.web: a tool for RNA-Seq-based transcript quantitation.Nucleic acids research · 2010Article
- mGene: accurate SVM-based gene finding with an application to nematode genomes.Genome research · 2009Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We describe mGene.web, a web service for the genome-wide prediction of protein coding genes from eukaryotic DNA sequences. It offers pre-trained models for the recognition of gene structures including untranslated regions in an increasing number of organisms. With mGene.web, users have the additional possibility to train the system with their own data for other organisms on the push of a button, a functionality that will greatly accelerate the annotation of newly sequenced genomes. The system is built in a highly modular way, such that individual components of the framework, like the promoter prediction tool or the splice site predictor, can be used autonomously. The underlying gene finding system mGene is based on discriminative machine learning techniques and its high accuracy has been demonstrated in an international competition on nematode genomes. mGene.web is available at http://www.mgene.org/web, it is free of charge and can be used for eukaryotic genomes of small to moderate size (several hundred Mbp).
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.