Evidence map›Paper›PMID 19494084›Full record

ArticleClinical and vaccine immunology : CVI2009

Selection of polymorphic peptides from GRA6 and GRA7 sequences of Toxoplasma gondii strains to be used in serotyping.

Susana Sousa, Daniel Ajzenberg, Maggy Marle, Dominique Aubert, Isabelle Villena, José Correia da Costa, Marie-Laure Dardé

Abstract readEvaluation Study
In one paragraph

Article in Clinical and vaccine immunology : CVI, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Serotyping, a challenging approach forFrontiers in medicine · 2023
    Review
  3. Article
  4. Biosensor Based Immunoassay: A New Approach for Serotyping ofNanomaterials (Basel, Switzerland) · 2021
    Article
  5. Frontiers in cellular and infection microbiology · 2021
    Article
  6. Testing New Peptides FromFrontiers in cellular and infection microbiology · 2019
    Article
  7. Serotyping ofFrontiers in cellular and infection microbiology · 2019
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Prematurity and severity are associated with Toxoplasma gondii alleles (NCCCTS, 1981-2009).Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2012
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Susana SousaCenter for Parasite Immunology and Biology, INSA, Porto, Portugal.
Daniel Ajzenberg
Maggy Marle
Dominique Aubert
Isabelle Villena
José Correia da Costa
Marie-Laure Dardé

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The evaluation of Toxoplasma gondii isolates obtained from geographical environments other than Europe and North America revealed the existence of atypical strains that are not included in the three archetypal clonal lineages (lineages I, II, and III). GRA6 and GRA7 are polymorphic genes that have been used for the genotyping of Toxoplasma. The coding regions of GRA6 and GRA7 from 49 nonarchetypal strains were sequenced and compared with the sequences of type I, II, and III reference strains. Eighteen and 10 different amino acid sequences were found for GRA6 and GRA7, respectively. The polymorphisms found between the different sequences were analyzed, with the objective of defining peptides to be used for the serotyping of Toxoplasma infections. Two peptides specific for clonal lineages I and III (peptides GRA7I and GRA7III, respectively) were selected from the GRA7 locus. Three peptides specific for some atypical strains (peptides Am6, Af6, and Am7) were selected from both the GRA6 and the GRA7 loci. Serum samples from humans infected with Toxoplasma strains of known genotypes were serotyped with the selected peptides. Peptide GRA7III seems to be a good candidate for the serotyping of infections caused by type III strains. Peptide GRA7I had a very low sensitivity. Peptides Am6 and Af6 had low specificities, since they reacted with serum samples from patients infected with strains belonging to the three archetypal lineages. Although peptide Am7 was specific, it had low sensitivity.

Indexed as

Antigens, ProtozoanProtozoan ProteinsAnimalsAntibodies, ProtozoanHumansMolecular Sequence DataPolymorphism, GeneticSensitivity and SpecificitySequence Analysis, DNASequence Homology, Amino AcidSerotypingToxoplasmaAntibodies, ProtozoanAntigens, ProtozoanGRA6 protein, Toxoplasma gondiiGRA7 protein, Toxoplasma gondiiProtozoan Proteins

Identifiers

PMID19494084
PMCPMC2725539

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.